View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11530_high_4 (Length: 531)

Name: NF11530_high_4
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11530_high_4
NF11530_high_4
[»] chr4 (12 HSPs)
chr4 (226-531)||(23883453-23883754)
chr4 (98-225)||(35605991-35606117)
chr4 (402-531)||(23419728-23419856)
chr4 (180-225)||(25725811-25725856)
chr4 (180-224)||(53777822-53777866)
chr4 (186-226)||(56226461-56226501)
chr4 (299-330)||(17539038-17539069)
chr4 (183-226)||(24666128-24666171)
chr4 (183-225)||(14527582-14527624)
chr4 (169-226)||(36248398-36248455)
chr4 (181-225)||(34450815-34450859)
chr4 (183-223)||(38519193-38519233)
[»] chr3 (8 HSPs)
chr3 (18-225)||(24511994-24512209)
chr3 (181-225)||(53344017-53344061)
chr3 (183-226)||(3584004-3584047)
chr3 (180-226)||(24515016-24515062)
chr3 (183-225)||(47571196-47571238)
chr3 (183-225)||(49349676-49349718)
chr3 (183-225)||(52924439-52924481)
chr3 (180-225)||(15287567-15287612)
[»] chr7 (13 HSPs)
chr7 (34-225)||(28007157-28007355)
chr7 (34-167)||(20568026-20568167)
chr7 (180-226)||(28007816-28007862)
chr7 (183-225)||(35892309-35892351)
chr7 (180-226)||(36611497-36611543)
chr7 (180-226)||(41358310-41358356)
chr7 (183-225)||(44120358-44120400)
chr7 (180-225)||(3849597-3849642)
chr7 (180-225)||(41965780-41965825)
chr7 (181-225)||(767136-767180)
chr7 (183-223)||(8754175-8754215)
chr7 (183-227)||(35891471-35891515)
chr7 (177-225)||(46491688-46491736)
[»] chr2 (10 HSPs)
chr2 (37-216)||(29388084-29388270)
chr2 (159-225)||(30201969-30202036)
chr2 (180-215)||(4716123-4716158)
chr2 (249-292)||(19429426-19429469)
chr2 (180-226)||(1141299-1141345)
chr2 (181-227)||(18537497-18537543)
chr2 (183-225)||(44987545-44987587)
chr2 (180-225)||(7754970-7755015)
chr2 (299-332)||(19436593-19436626)
chr2 (180-225)||(29387424-29387469)
[»] chr1 (5 HSPs)
chr1 (226-330)||(24983341-24983440)
chr1 (183-225)||(26240114-26240156)
chr1 (180-226)||(50657144-50657190)
chr1 (180-225)||(12449315-12449360)
chr1 (180-225)||(26240874-26240919)
[»] chr5 (11 HSPs)
chr5 (251-330)||(18594248-18594326)
chr5 (81-217)||(4083573-4083708)
chr5 (180-227)||(35524880-35524927)
chr5 (176-228)||(40372159-40372211)
chr5 (180-226)||(4082992-4083038)
chr5 (183-225)||(33086729-33086771)
chr5 (183-225)||(38129126-38129168)
chr5 (180-225)||(4095112-4095156)
chr5 (180-225)||(35524122-35524167)
chr5 (183-227)||(23253492-23253536)
chr5 (183-227)||(33087472-33087516)
[»] chr8 (7 HSPs)
chr8 (180-225)||(22632971-22633016)
chr8 (180-224)||(22632323-22632367)
chr8 (187-226)||(9277792-9277831)
chr8 (181-228)||(42663274-42663321)
chr8 (183-225)||(26847727-26847769)
chr8 (180-226)||(35399946-35399992)
chr8 (183-225)||(42094009-42094051)
[»] chr6 (1 HSPs)
chr6 (180-227)||(16718997-16719044)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 226 - 531
Target Start/End: Complemental strand, 23883754 - 23883453
Alignment:
Q  226 aatggaaacggtcaagcacaataaataaaattgagcaaaaactcattattgataacaataactcttgtactataaatacttttgaaatatccaataatta 325  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  23883754 aatggaaacggtcaagcacaataaa----attgagcaaaaactcattattgataacaataactcttgaactaaaaatacttttgaaatatccaataatta 23883659  T
Q  326 caacaatatcgacgccacaatttccacaactgatctactatgttgcaaaacatcagacattaaagcactccacaatttcccaatcccactccacttaatg 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  23883658 caacaatatcgacgccacaatttccacaactgatctactatgttgcaaaacatcagacattaaagcactccacaattttccaatcccacttcacttaatg 23883559  T
Q  426 tctgatgttttgcactatactcttacctgccacagtccctcatttactatctgaaagcgtagaaccattacttgcgagtgaacatgaagctcgatcttat 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||    
T  23883558 tctgatgttttgcactatactcttacctgccacagtccctcatttactatctgaaagcgtaaaaccactacttgcgagtgaaaatgaagctcgatcttat 23883459  T
Q  526 ggaaac 531  Q
    ||||||    
T  23883458 ggaaac 23883453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 35606117 - 35605991
Alignment:
Q  98 gagaagatagaaaagagatcaagtgcaggaaggtgcatgataaaaactatgaactcatttaatctaatggttattagacatagtccaccggtgagagact 197  Q
    ||||||| ||||||  |||||||||||| |||||| |||||||||| |  | ||||||| ||||||| |||| |||||||| |||||||  |||| ||||    
T  35606117 gagaagaaagaaaactgatcaagtgcagaaaggtgtatgataaaaattggggactcatt-aatctaaaggttgttagacatggtccaccaatgagggact 35606019  T
Q  198 taattgctccctcatcctagaatccacc 225  Q
    |||||||||||||| |||||||||||||    
T  35606018 taattgctccctcaccctagaatccacc 35605991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 402 - 531
Target Start/End: Original strand, 23419728 - 23419856
Alignment:
Q  402 ttcccaatcccactccacttaatgtctgatgttttgcactatactcttacctgccaca--gtccctcatttactatctgaaagcgtagaaccattacttg 499  Q
    ||||||||||  ||||| ||||||||| ||||||||||||||||||  ||||||||||  ||||||||||||||| | ||||||||||||||   ||| |    
T  23419728 ttcccaatcctgctccatttaatgtctaatgttttgcactatactccgacctgccacaccgtccctcatttactagccgaaagcgtagaacc---actag 23419824  T
Q  500 cgagtgaacatgaagctcgatcttatggaaac 531  Q
    | | | || |||||||||||||||||||||||    
T  23419825 caactcaaaatgaagctcgatcttatggaaac 23419856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 25725811 - 25725856
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    ||||||||||||| |||||||||||||||||| |||||| ||||||    
T  25725811 gtccaccggtgagggacttaattgctccctcaccctagactccacc 25725856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 53777866 - 53777822
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccac 224  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||    
T  53777866 gtccaccggtgagagacttaattggaccctcatcctaaaatccac 53777822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 56226501 - 56226461
Alignment:
Q  186 cggtgagagacttaattgctccctcatcctagaatccacca 226  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  56226501 cggtgagagacttaattgatccctcatcttagaatccacca 56226461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 330
Target Start/End: Complemental strand, 17539069 - 17539038
Alignment:
Q  299 aaatacttttgaaatatccaataattacaaca 330  Q
    ||||||||||||||||||||||||||||||||    
T  17539069 aaatacttttgaaatatccaataattacaaca 17539038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 24666171 - 24666128
Alignment:
Q  183 caccggtgagagacttaattgctccctcatcctagaatccacca 226  Q
    |||||||||| |||||||||| ||||||| ||||||||||||||    
T  24666171 caccggtgagggacttaattgatccctcaccctagaatccacca 24666128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 14527582 - 14527624
Alignment:
Q  183 caccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    |||||||||| |||||||||| ||||||| |||||||||||||    
T  14527582 caccggtgagggacttaattgatccctcaccctagaatccacc 14527624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 36248455 - 36248398
Alignment:
Q  169 tattagacatagtccaccggtgagagacttaattgctccctcatcctagaatccacca 226  Q
    ||||| |||| ||||||||||||| || ||||||||||||||| | |||||| |||||    
T  36248455 tattatacatggtccaccggtgagggatttaattgctccctcaccttagaattcacca 36248398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 34450859 - 34450815
Alignment:
Q  181 tccaccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    |||||||||||| |||||||||| ||||||| |||||||| ||||    
T  34450859 tccaccggtgagggacttaattgatccctcaccctagaattcacc 34450815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 38519193 - 38519233
Alignment:
Q  183 caccggtgagagacttaattgctccctcatcctagaatcca 223  Q
    |||||||||| |||||||||||||| ||| |||||||||||    
T  38519193 caccggtgagggacttaattgctccttcaccctagaatcca 38519233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 7e-75; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 24512209 - 24511994
Alignment:
Q  18 tattattgagaaacgcacgacaatgggatttgagaaggtgatagatgaaaacaaggaatgctgcaaa--------ttaaagaggagatgagaagatagaa 109  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||        |||||||||||| ||||||| ||||    
T  24512209 tattattgagaaacgaacgacaatgggatttgagaaggtgatagatgaaaacaaggaatactgcaaaactgcaaattaaagaggagaggagaagaaagaa 24512110  T
Q  110 aagagatcaagtgcaggaaggtgcatgataaaaactatgaactcatttaatctaatggttattagacatagtccaccggtgagagacttaattgctccct 209  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||    
T  24512109 aagagatcaagttcaggaaggtgcatgataaaaactatggactcatttaatctaatggttgttagacatggtccaccggtgagggacttaattgctccct 24512010  T
Q  210 catcctagaatccacc 225  Q
    || |||| ||||||||    
T  24512009 caccctaaaatccacc 24511994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 53344061 - 53344017
Alignment:
Q  181 tccaccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    |||||||||||| ||||| |||| |||||||||||||||||||||    
T  53344061 tccaccggtgagggacttgattgatccctcatcctagaatccacc 53344017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 3584047 - 3584004
Alignment:
Q  183 caccggtgagagacttaattgctccctcatcctagaatccacca 226  Q
    |||||||||| || ||||||||||||||| ||||||||||||||    
T  3584047 caccggtgagggatttaattgctccctcaccctagaatccacca 3584004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 24515016 - 24515062
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccacca 226  Q
    ||||||||||||| ||||||||  |||||||| ||||||||||||||    
T  24515016 gtccaccggtgagggacttaataactccctcaccctagaatccacca 24515062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 47571238 - 47571196
Alignment:
Q  183 caccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    |||||||||| |||||||||| ||||||| |||||||||||||    
T  47571238 caccggtgagggacttaattgatccctcaccctagaatccacc 47571196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 49349718 - 49349676
Alignment:
Q  183 caccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    |||||||||| |||||||||| ||||||| |||||||||||||    
T  49349718 caccggtgagggacttaattgatccctcaccctagaatccacc 49349676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 52924439 - 52924481
Alignment:
Q  183 caccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    |||||||||| |||||||||||||||||| | |||||||||||    
T  52924439 caccggtgagggacttaattgctccctcaccttagaatccacc 52924481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 15287612 - 15287567
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    ||||||||||||| ||||||||||  |||||| |||||||||||||    
T  15287612 gtccaccggtgagggacttaattggaccctcaccctagaatccacc 15287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 34 - 225
Target Start/End: Complemental strand, 28007355 - 28007157
Alignment:
Q  34 acgacaatgggatttgagaaggtgatagatgaaaacaaggaatgctgca-------aattaaagaggagatgagaagatagaaaagagatcaagtgcagg 126  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||  ||       ||| |||||||| | ||||||| | ||||||||||||||||| |    
T  28007355 acgacaatgagatttgagaaggtgatagatgaaaacaaggaaggcaacactaaacaaatcaaagaggaaaggagaagaaataaaagagatcaagtgcatg 28007256  T
Q  127 aaggtgcatgataaaaactatgaactcatttaatctaatggttattagacatagtccaccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    |||||| |||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||| |||||||||||||    
T  28007255 aaggtgtatgataaaaactgtggactcatttaatctaatggttgttagacatggtccaccggtgagggacttaattgctccctcaccctagaatccacc 28007157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 34 - 167
Target Start/End: Original strand, 20568026 - 20568167
Alignment:
Q  34 acgacaatgggatttgagaaggtgatagatgaaaacaaggaatgctgcaa--------attaaagaggagatgagaagatagaaaagagatcaagtgcag 125  Q
    |||||||| |||||||| ||||||||||||| |||||||||| ||  |||        ||||||||||| |  |||||| ||||||||| ||||||||||    
T  20568026 acgacaataggatttgaaaaggtgatagatgtaaacaaggaaggcatcaatagagaaaattaaagaggataaaagaagaaagaaaagaggtcaagtgcag 20568125  T
Q  126 gaaggtgcatgataaaaactatgaactcatttaatctaatgg 167  Q
    ||||||  |||||||||||| || ||||||||||||||||||    
T  20568126 gaaggtatatgataaaaactgtggactcatttaatctaatgg 20568167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 28007816 - 28007862
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccacca 226  Q
    ||||||||||||| |||||||| ||||| ||| ||||||||||||||    
T  28007816 gtccaccggtgagggacttaatagctccatcaccctagaatccacca 28007862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 35892309 - 35892351
Alignment:
Q  183 caccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    |||||||||| || ||||||||||||||| |||||||||||||    
T  35892309 caccggtgagggatttaattgctccctcaccctagaatccacc 35892351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 36611497 - 36611543
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccacca 226  Q
    |||||||||||||||| |||||||  |||||| ||||||||||||||    
T  36611497 gtccaccggtgagagatttaattgaaccctcaccctagaatccacca 36611543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 41358356 - 41358310
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccacca 226  Q
    ||||| ||||||| |||||||||| |||||||||| |||||||||||    
T  41358356 gtccatcggtgagggacttaattgatccctcatccaagaatccacca 41358310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 44120400 - 44120358
Alignment:
Q  183 caccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    |||||||||| |||||||||||||||||| | |||||||||||    
T  44120400 caccggtgagggacttaattgctccctcaccttagaatccacc 44120358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 3849642 - 3849597
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    ||||||||||||| || || |||| |||||||||||||||||||||    
T  3849642 gtccaccggtgagggatttgattgatccctcatcctagaatccacc 3849597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 41965780 - 41965825
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    ||||||||||||| ||||||||||  |||||| |||||||||||||    
T  41965780 gtccaccggtgagggacttaattggaccctcaccctagaatccacc 41965825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 767180 - 767136
Alignment:
Q  181 tccaccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    |||||||||||| ||||||||||  |||||| |||||||||||||    
T  767180 tccaccggtgagggacttaattggaccctcaccctagaatccacc 767136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 8754215 - 8754175
Alignment:
Q  183 caccggtgagagacttaattgctccctcatcctagaatcca 223  Q
    ||||||||||||||||||||||| ||||| | |||||||||    
T  8754215 caccggtgagagacttaattgcttcctcaccttagaatcca 8754175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 35891515 - 35891471
Alignment:
Q  183 caccggtgagagacttaattgctccctcatcctagaatccaccaa 227  Q
    ||||| |||| |||||||||||||| | |||||||||||||||||    
T  35891515 caccgatgagggacttaattgctccttaatcctagaatccaccaa 35891471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 46491688 - 46491736
Alignment:
Q  177 atagtccaccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    |||||||||||||||| |||||| |||  |||||| |||||||||||||    
T  46491688 atagtccaccggtgagggacttagttgaaccctcaccctagaatccacc 46491736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 4e-39; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 37 - 216
Target Start/End: Original strand, 29388084 - 29388270
Alignment:
Q  37 acaatgggatttgagaaggtgatagatgaaaacaaggaatgc--------tgcaaattaaagaggagatgagaagatagaaaagagatcaagtgcaggaa 128  Q
    ||||||||||||||||||||||||||| |||||||||||  |        |||||||||  ||||||| ||||||| |||||||||||||| | ||||||    
T  29388084 acaatgggatttgagaaggtgatagataaaaacaaggaagacagcaaaactgcaaattagggaggagaggagaagaaagaaaagagatcaaatacaggaa 29388183  T
Q  129 ggtgcatgataaaaactatgaactcatttaatctaatggttattagacatagtccaccggtgagagacttaattgctccctcatccta 216  Q
    ||||||||||||||| | || |||||||||||||||| ||| |||||||||||||||  ||||| |||||||||||||||||| ||||    
T  29388184 ggtgcatgataaaaa-tgtggactcatttaatctaatagttgttagacatagtccactagtgagggacttaattgctccctcacccta 29388270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 30201969 - 30202036
Alignment:
Q  159 atctaatggt-tattagacatagtccaccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    |||||||||| ||||| | || ||||||||||||| |||||||||||||||||| | |||||||||||    
T  30201969 atctaatggtatattatagatggtccaccggtgagggacttaattgctccctcaccttagaatccacc 30202036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 4716158 - 4716123
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcct 215  Q
    |||||||||||||||||||||||| |||||||||||    
T  4716158 gtccaccggtgagagacttaattgatccctcatcct 4716123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 292
Target Start/End: Complemental strand, 19429469 - 19429426
Alignment:
Q  249 aataaaattgagcaaaaactcattattgataacaataactcttg 292  Q
    ||||||||||| ||||| |||||||||||||||||||| |||||    
T  19429469 aataaaattgaacaaaatctcattattgataacaataaatcttg 19429426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 1141345 - 1141299
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccacca 226  Q
    ||||||||||||| ||||| |||||||||||| | ||||||||||||    
T  1141345 gtccaccggtgagggacttcattgctccctcaccttagaatccacca 1141299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 18537497 - 18537543
Alignment:
Q  181 tccaccggtgagagacttaattgctccctcatcctagaatccaccaa 227  Q
    |||||||||||| ||||||||||  |||||||| |||||||||||||    
T  18537497 tccaccggtgagggacttaattgaaccctcatcatagaatccaccaa 18537543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 44987545 - 44987587
Alignment:
Q  183 caccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  44987545 caccagtgagagacttaattgatccctcaccctagaatccacc 44987587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 7754970 - 7755015
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    ||||||||||||  |||||||||| ||||||| |||||||||||||    
T  7754970 gtccaccggtgaaggacttaattgatccctcaccctagaatccacc 7755015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 19436626 - 19436593
Alignment:
Q  299 aaatacttttgaaatatccaataattacaacaat 332  Q
    |||||||||||||||||| |||||||||||||||    
T  19436626 aaatacttttgaaatatcaaataattacaacaat 19436593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 29387469 - 29387424
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    |||||||||||||  ||||||| |||||||||||||||||| ||||    
T  29387469 gtccaccggtgaggaacttaatagctccctcatcctagaattcacc 29387424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 226 - 330
Target Start/End: Original strand, 24983341 - 24983440
Alignment:
Q  226 aatggaaacggtcaagcacaataaataaaattgagcaaaaactcattattgataacaataactcttgtactataaatacttttgaaatatccaataatta 325  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||    
T  24983341 aatggaaacggtcaagcacaata----aaattgagcaaaaactcattattgataacaataaatcttgaacta-aaatacttttgaaatatccaataatta 24983435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 26240156 - 26240114
Alignment:
Q  183 caccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    |||||||||| |||||||||| ||||||| |||||||||||||    
T  26240156 caccggtgagggacttaattgatccctcaccctagaatccacc 26240114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 50657144 - 50657190
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccacca 226  Q
    ||||||||||||| |||||||||||||||||  | ||||||||||||    
T  50657144 gtccaccggtgagggacttaattgctccctcgccttagaatccacca 50657190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 12449315 - 12449360
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    ||||||||||||| |||||||||| ||||||| |||| ||||||||    
T  12449315 gtccaccggtgagggacttaattgatccctcaccctaaaatccacc 12449360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 26240874 - 26240919
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    ||||||||||||| ||||||||||  |||||| |||||||||||||    
T  26240874 gtccaccggtgagggacttaattgaaccctcaccctagaatccacc 26240919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 251 - 330
Target Start/End: Complemental strand, 18594326 - 18594248
Alignment:
Q  251 taaaattgagcaaaaactcattattgataacaataactcttgtactataaatacttttgaaatatccaataattacaaca 330  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  18594326 taaaattgagcaaaaactcattattgataacaataactcttgaacta-aaatacttttgaaatatccaataattacaaca 18594248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 217
Target Start/End: Original strand, 4083573 - 4083708
Alignment:
Q  81 caaattaaagaggagatgagaagatagaaaagagatcaagtgcaggaaggtgcatgataaaaactatgaactcatttaatctaatggttattagacatag 180  Q
    ||||| |||||||||  ||||||| | ||||| |||||||||||| |||||| ||||||||| ||  | ||||||||||| ||| |||| |||||||| |    
T  4083573 caaatgaaagaggagg-gagaagaaataaaagtgatcaagtgcagaaaggtgtatgataaaatctggggactcatttaatttaaaggttgttagacatgg 4083671  T
Q  181 tccaccggtgagagacttaattgctccctcatcctag 217  Q
    ||||||| |||| |||||||||||||||||| |||||    
T  4083672 tccaccgatgagggacttaattgctccctcaccctag 4083708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 35524880 - 35524927
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccaccaa 227  Q
    |||||||||||||| ||||||||| ||||||| |||||||||||||||    
T  35524880 gtccaccggtgagaaacttaattgatccctcaccctagaatccaccaa 35524927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 40372159 - 40372211
Alignment:
Q  176 catagtccaccggtgagagacttaattgctccctcatcctagaatccaccaat 228  Q
    |||||||||||||||||  |||||||||  |||||| ||||||||||||||||    
T  40372159 catagtccaccggtgaggaacttaattgaaccctcaccctagaatccaccaat 40372211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 4083038 - 4082992
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccacca 226  Q
    |||||||| |||| |||||||| ||||||||| ||||||||||||||    
T  4083038 gtccaccgatgagggacttaatagctccctcaccctagaatccacca 4082992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 33086771 - 33086729
Alignment:
Q  183 caccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    |||||||||  |||||||||| |||||||||||||||||||||    
T  33086771 caccggtgaaggacttaattgatccctcatcctagaatccacc 33086729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 38129168 - 38129126
Alignment:
Q  183 caccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    |||||||||| |||||||||||||||||| | |||||||||||    
T  38129168 caccggtgagggacttaattgctccctcaccttagaatccacc 38129126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 4095156 - 4095112
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    |||||||||||||||||||||||| | ||||| |||||||||||||    
T  4095156 gtccaccggtgagagacttaattgat-cctcaccctagaatccacc 4095112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 35524167 - 35524122
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    ||||||||||||| ||||||||||  | ||||||||||||||||||    
T  35524167 gtccaccggtgagggacttaattgaactctcatcctagaatccacc 35524122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 23253492 - 23253536
Alignment:
Q  183 caccggtgagagacttaattgctccctcatcctagaatccaccaa 227  Q
    |||||||||| ||||||||||  |||||| |||||||||||||||    
T  23253492 caccggtgagggacttaattggaccctcaccctagaatccaccaa 23253536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 33087472 - 33087516
Alignment:
Q  183 caccggtgagagacttaattgctccctcatcctagaatccaccaa 227  Q
    |||||||||| ||||| |||| |||||||||||||||| ||||||    
T  33087472 caccggtgagggacttgattgatccctcatcctagaattcaccaa 33087516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 22632971 - 22633016
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    ||||||||||||| |||||||||| ||||||| |||||||||||||    
T  22632971 gtccaccggtgagggacttaattgatccctcaccctagaatccacc 22633016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 22632367 - 22632323
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccac 224  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||||    
T  22632367 gtccaccggtgagggacttaattgatccctcaccctagaatccac 22632323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 9277792 - 9277831
Alignment:
Q  187 ggtgagagacttaattgctccctcatcctagaatccacca 226  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  9277792 ggtgagggacttaattgctccctcaccctagaatccacca 9277831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 42663321 - 42663274
Alignment:
Q  181 tccaccggtgagagacttaattgctccctcatcctagaatccaccaat 228  Q
    |||||||||||||||||||||||  | |||| ||||||||||||||||    
T  42663321 tccaccggtgagagacttaattggactctcaccctagaatccaccaat 42663274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 26847727 - 26847769
Alignment:
Q  183 caccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    ||||||||||  ||||||||| |||||||||||||||||||||    
T  26847727 caccggtgaggaacttaattgatccctcatcctagaatccacc 26847769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 35399946 - 35399992
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccacca 226  Q
    ||||||||||||| || || |||| ||||||||||||||||||||||    
T  35399946 gtccaccggtgagggatttgattgatccctcatcctagaatccacca 35399992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 42094051 - 42094009
Alignment:
Q  183 caccggtgagagacttaattgctccctcatcctagaatccacc 225  Q
    |||||||||| |||||||||| ||||||| |||||||||||||    
T  42094051 caccggtgagggacttaattgatccctcaccctagaatccacc 42094009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 16718997 - 16719044
Alignment:
Q  180 gtccaccggtgagagacttaattgctccctcatcctagaatccaccaa 227  Q
    ||||||||||||| |||||||||| ||| ||| |||||||||||||||    
T  16718997 gtccaccggtgagggacttaattgatccgtcaccctagaatccaccaa 16719044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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