View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_high_46 (Length: 217)
Name: NF11530_high_46
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 46359460 - 46359642
Alignment:
| Q |
20 |
gttaccacttaatatgatcaaaatgctatgtttnnnnnnngaaactgtacatttggctttcaagatgttgaatgatatccctgaggaagtggacgaccgg |
119 |
Q |
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| T |
46359460 |
gttaccacttaatatgatcaaaatgctatgtttaaaaaaagaaactgtacatttggctttcaagatgttgaatgatatccccgaggaggtggacgaccgg |
46359559 |
T |
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| Q |
120 |
gaaaaattgtttaaactcatgctctttacacatgttttcggagccttcaatatacgatatcagtataattattactgcctatg |
202 |
Q |
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| T |
46359560 |
gaaaaattgtttaaactcatgctctttacacatgttttcggagccttcaatatacgatatcagtataattattactgcctatg |
46359642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 5e-58; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 44460590 - 44460736
Alignment:
| Q |
20 |
gttaccacttaatatgatcaaaatgctatgtttnnnnnnngaaactgtacatttggctttcaagatgttgaatgatatccctgaggaagtggacgaccgg |
119 |
Q |
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||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
44460590 |
gttaccacttaatatgatccaaatgctatgtttaaaaaaagaaactgtacatttggctttcaagatgttgaatgatatccccgaggaggtggacgaccgg |
44460689 |
T |
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| Q |
120 |
gaaaaattgtttaaactcatgctctttacacatgttttcggagcctt |
166 |
Q |
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| T |
44460690 |
gaaaaattgtttaaactcatgctctttacacatgttttcggagcctt |
44460736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 44468123 - 44468269
Alignment:
| Q |
20 |
gttaccacttaatatgatcaaaatgctatgtttnnnnnnngaaactgtacatttggctttcaagatgttgaatgatatccctgaggaagtggacgaccgg |
119 |
Q |
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|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
44468123 |
gttaccacttaatatgatccaaatgctatgtttaaaaaaagaaactgtacatttggctttcaagatgttgaatgatatccccgaggaggtggacgaccgg |
44468222 |
T |
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| Q |
120 |
gaaaaattgtttaaactcatgctctttacacatgttttcggagcctt |
166 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44468223 |
gaaaaattgtttaaactcatgctctttacacatgttttcggagcctt |
44468269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 202
Target Start/End: Complemental strand, 34501880 - 34501841
Alignment:
| Q |
163 |
ccttcaatatacgatatcagtataattattactgcctatg |
202 |
Q |
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| T |
34501880 |
ccttcaatatatgatatcagtataattattactgcctatg |
34501841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 44460804 - 44460843
Alignment:
| Q |
163 |
ccttcaatatacgatatcagtataattattactgcctatg |
202 |
Q |
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| T |
44460804 |
ccttcaatatatgatatcagtataattattactgcctatg |
44460843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 44468337 - 44468376
Alignment:
| Q |
163 |
ccttcaatatacgatatcagtataattattactgcctatg |
202 |
Q |
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| T |
44468337 |
ccttcaatatatgatatcagtataattattactgcctatg |
44468376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 34502051 - 34502006
Alignment:
| Q |
60 |
gaaactgtacatttggctttcaagatgttgaatgatatccctgagg |
105 |
Q |
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| T |
34502051 |
gaaacggtacatctggctttggagatgttgaatgatatccctgagg |
34502006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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