View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_high_48 (Length: 203)
Name: NF11530_high_48
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_high_48 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 11943648 - 11943825
Alignment:
| Q |
19 |
acttgaaggattaaattggagagagagtgttgatttagggacaaagttgatggattattaatatgaaataacttcatcatgtnnnnnnnntagaccagaa |
118 |
Q |
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| T |
11943648 |
actttaaggattaaattggagagagagtgttgatttagggacaaagttgatggattattaatatgaaataacttcatcatgtaaaaaaaatagaccagaa |
11943747 |
T |
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| Q |
119 |
gggccatcatctggcaacaatgctaggttaacaggacattcagcaccttcatcaatgcttaaaaaccctttcatctca |
196 |
Q |
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| T |
11943748 |
gggccatcatctggcaacaatgctaggttaacaggacattcagcgccttcatcaatgcttaaaaaccctttcatctca |
11943825 |
T |
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Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 11928179 - 11927998
Alignment:
| Q |
15 |
atatacttgaaggattaaattggagagagagtgttgatttagggacaaagttgatggattattaatatgaaataacttcatcatgtnnnnnnnntagacc |
114 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
11928179 |
atatactttaaggataaaattggagagagagtgttgatttagggacaaagttgatggattattaatatgaaataacttcatcatgtaaaaaaaattgacc |
11928080 |
T |
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| Q |
115 |
agaagggccatcatctggcaacaatgctaggttaacaggacattcagcaccttcatcaatgcttaaaaaccctttcatctca |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11928079 |
agaagggccatcatctggcaacaatgctaggttaacaggacattcagcgccttcatcaatgcttaaaaaccctttcatctca |
11927998 |
T |
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