View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11530_high_8 (Length: 485)

Name: NF11530_high_8
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11530_high_8
NF11530_high_8
[»] chr4 (4 HSPs)
chr4 (187-297)||(53350590-53350698)
chr4 (92-166)||(53350424-53350495)
chr4 (12-93)||(53350291-53350372)
chr4 (377-478)||(53350799-53350899)
[»] chr5 (14 HSPs)
chr5 (308-360)||(26032483-26032535)
chr5 (308-357)||(38456970-38457019)
chr5 (405-449)||(38456899-38456943)
chr5 (408-450)||(38171901-38171943)
chr5 (408-450)||(38181535-38181577)
chr5 (408-450)||(38189554-38189596)
chr5 (408-450)||(38208761-38208803)
chr5 (408-450)||(38216779-38216821)
chr5 (405-450)||(26032558-26032603)
chr5 (308-360)||(38171822-38171874)
chr5 (308-360)||(38181606-38181658)
chr5 (308-360)||(38189473-38189525)
chr5 (308-360)||(38208832-38208884)
chr5 (308-360)||(38216698-38216750)


Alignment Details
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 187 - 297
Target Start/End: Original strand, 53350590 - 53350698
Alignment:
Q  187 atacatcagttttgtcatattctgtcctatatatagttacctccaaacaaatgttagaaggataaccatgatttttctctcagccacagttctaagacca 286  Q
    ||||||||||||||||| | |||||||| ||||  ||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53350590 atacatcagttttgtcacactctgtcctgtata--gttacctccaaaataatgttagaaggataaccatgattttcctctcagccacagttctaagacca 53350687  T
Q  287 aaacgagtaat 297  Q
    ||| |||||||    
T  53350688 aaaagagtaat 53350698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 53350424 - 53350495
Alignment:
Q  92 agctaggaacttttttcttggaggggctgaaaaatatacaatatgtgaacaataatttttcaaatttgagtaatt 166  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  53350424 agctaggaactttttccttggaggggctgaaaaatatacaatatgtgaac---aatttttcaaatttgagtaatt 53350495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 53350291 - 53350372
Alignment:
Q  12 acagacacaatgagcagggcaaggactcaaaacaaaaacaagagttcaaagagaacaatggcaaaagctaagaacatgaaag 93  Q
    |||||||||| |||||| | | |||||||||||| |||||||||||||||||||||||| ||||||   |||||||||||||    
T  53350291 acagacacaacgagcagaggagggactcaaaacagaaacaagagttcaaagagaacaatagcaaaatgcaagaacatgaaag 53350372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 478
Target Start/End: Original strand, 53350799 - 53350899
Alignment:
Q  377 caactcaattctcagaagaaaaaacactaaatacagaaaagttgtgctgcaaacactataagctttttatatcgaatggaagcttgtcatgcaagttact 476  Q
    |||||||||||||||||  ||||| ||||||||| ||||||||| |  ||||||||  ||||||||||| ||||  ||| ||||||||||||||||||||    
T  53350799 caactcaattctcagaaagaaaaa-actaaatactgaaaagttgcgacgcaaacaccgtaagctttttacatcgtgtgggagcttgtcatgcaagttact 53350897  T
Q  477 gt 478  Q
    ||    
T  53350898 gt 53350899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 26032483 - 26032535
Alignment:
Q  308 attgcataaagtagaattaatttaatagatctatcaaataaaatcgtttagac 360  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||||||||||    
T  26032483 attgcataaagtagaattaatttaatacatctgtcaaataacatcgtttagac 26032535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 357
Target Start/End: Complemental strand, 38457019 - 38456970
Alignment:
Q  308 attgcataaagtagaattaatttaatagatctatcaaataaaatcgttta 357  Q
    ||||||||||||||||||||||||||| |||| |||||||| ||||||||    
T  38457019 attgcataaagtagaattaatttaatatatctgtcaaataacatcgttta 38456970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 449
Target Start/End: Complemental strand, 38456943 - 38456899
Alignment:
Q  405 aaatacagaaaagttgtgctgcaaacactataagctttttatatc 449  Q
    |||||||||||||||||| |||||||| |||||||||||||||||    
T  38456943 aaatacagaaaagttgtgttgcaaacaatataagctttttatatc 38456899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 450
Target Start/End: Original strand, 38171901 - 38171943
Alignment:
Q  408 tacagaaaagttgtgctgcaaacactataagctttttatatcg 450  Q
    ||||||||| ||||| |||||||||||||||||||||||||||    
T  38171901 tacagaaaaattgtgttgcaaacactataagctttttatatcg 38171943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 450
Target Start/End: Complemental strand, 38181577 - 38181535
Alignment:
Q  408 tacagaaaagttgtgctgcaaacactataagctttttatatcg 450  Q
    ||||||||| ||||| |||||||||||||||||||||||||||    
T  38181577 tacagaaaaattgtgttgcaaacactataagctttttatatcg 38181535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 450
Target Start/End: Original strand, 38189554 - 38189596
Alignment:
Q  408 tacagaaaagttgtgctgcaaacactataagctttttatatcg 450  Q
    ||||||||| ||||| |||||||||||||||||||||||||||    
T  38189554 tacagaaaaattgtgttgcaaacactataagctttttatatcg 38189596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 450
Target Start/End: Complemental strand, 38208803 - 38208761
Alignment:
Q  408 tacagaaaagttgtgctgcaaacactataagctttttatatcg 450  Q
    ||||||||| ||||| |||||||||||||||||||||||||||    
T  38208803 tacagaaaaattgtgttgcaaacactataagctttttatatcg 38208761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 450
Target Start/End: Original strand, 38216779 - 38216821
Alignment:
Q  408 tacagaaaagttgtgctgcaaacactataagctttttatatcg 450  Q
    ||||||||| ||||| |||||||||||||||||||||||||||    
T  38216779 tacagaaaaattgtgttgcaaacactataagctttttatatcg 38216821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 450
Target Start/End: Original strand, 26032558 - 26032603
Alignment:
Q  405 aaatacagaaaagttgtgctgcaaacactataagctttttatatcg 450  Q
    |||||||||||  ||||| |||||||||||||||||||||||||||    
T  26032558 aaatacagaaacattgtgttgcaaacactataagctttttatatcg 26032603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 38171822 - 38171874
Alignment:
Q  308 attgcataaagtagaattaatttaatagatctatcaaataaaatcgtttagac 360  Q
    |||||||||||| ||||||| ||||||||| | |||||||| |||||||||||    
T  38171822 attgcataaagtggaattaacttaatagatttgtcaaataacatcgtttagac 38171874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 38181658 - 38181606
Alignment:
Q  308 attgcataaagtagaattaatttaatagatctatcaaataaaatcgtttagac 360  Q
    ||||||||||||||||||||||| |||||| | |||||||  |||||||||||    
T  38181658 attgcataaagtagaattaattttatagatttgtcaaatagtatcgtttagac 38181606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 38189473 - 38189525
Alignment:
Q  308 attgcataaagtagaattaatttaatagatctatcaaataaaatcgtttagac 360  Q
    ||||||||||||||||||||||| |||||| | |||||||  |||||||||||    
T  38189473 attgcataaagtagaattaattttatagatttgtcaaatagtatcgtttagac 38189525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 38208884 - 38208832
Alignment:
Q  308 attgcataaagtagaattaatttaatagatctatcaaataaaatcgtttagac 360  Q
    ||||||||||||||||||||||| |||||| | |||||||  |||||||||||    
T  38208884 attgcataaagtagaattaattttatagatttgtcaaatagtatcgtttagac 38208832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 38216698 - 38216750
Alignment:
Q  308 attgcataaagtagaattaatttaatagatctatcaaataaaatcgtttagac 360  Q
    ||||||||||||||||||||||| |||||| | |||||||  |||||||||||    
T  38216698 attgcataaagtagaattaattttatagatttgtcaaatagtatcgtttagac 38216750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University