View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_low_11 (Length: 435)
Name: NF11530_low_11
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Original strand, 47634844 - 47635245
Alignment:
| Q |
18 |
cacagagactatcatcacatgcagactgttccttatccaaacgagctgtaatctggtacgacgagtgcatggttcgatattccaacacctcttttttctc |
117 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47634844 |
cacagagactatcatcagatgcagactgctccttatccaaacaagctgtaatctggtacgacgagtgcatggttcgatattccaacacctcttttttctc |
47634943 |
T |
|
| Q |
118 |
caccgtggctacaaggcctggcgttttcatgatgaacagcctaaatatcacaaaccaggagacattcatgcctttgttgtttgatacaatgaacaaaaca |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47634944 |
caccatggctacaaggcctggcgttttcatgatgaacagcctaaatatcacaaaccaggagacattcatgcctttgttgtttgatacaatgaacaaaaca |
47635043 |
T |
|
| Q |
218 |
gcagataatgctgcaaattcttctgttggtgctaagaaatacgcaacaaaggaagctagaatctctggttttcagacactttattgtatggctcagtgta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47635044 |
gcagataatgctgcaaattcttctgttggtgctaagaaatacgcaacaaaggaagctagcatctctggttttcagacactttattgtatggctcagtgta |
47635143 |
T |
|
| Q |
318 |
cagaggatttatcacagcaagattgcagaacgtgtcttagtgctgctattggagctcttccacagtgttgtgatggaaagcaaggtgggagagttttgtt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47635144 |
cagaggatttatcacagcaagattgcagaacgtgtcttagtgatgctattggagctcttccacagtgttgtgatggaaagcaaggtgggagagttttgtt |
47635243 |
T |
|
| Q |
418 |
tc |
419 |
Q |
| |
|
|| |
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|
| T |
47635244 |
tc |
47635245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 285 - 419
Target Start/End: Complemental strand, 9674764 - 9674630
Alignment:
| Q |
285 |
gttttcagacactttattgtatggctcagtgtacagaggatttatcacagcaagattgcagaacgtgtcttagtgctgctattggagctcttccacagtg |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9674764 |
gttttcagacactttattgtatggctcagtgtacagaggatttatcacagcaagattgcagaacgtgtcttagtgatgctattggagctcttccacagtg |
9674665 |
T |
|
| Q |
385 |
ttgtgatggaaagcaaggtgggagagttttgtttc |
419 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
9674664 |
ttgtgatggaaagcaaggtgggagagttttgtttc |
9674630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 157
Target Start/End: Complemental strand, 20128262 - 20128155
Alignment:
| Q |
50 |
ttatccaaacgagctgtaatctggtacgacgagtgcatggttcgatattccaacacctcttttttctccaccgtggctacaaggcctggcgttttcatga |
149 |
Q |
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||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||| || ||||| || ||||| | ||||| ||||| || | |
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| T |
20128262 |
ttatccaaacgagctgtcatttggtacgaggagtgcatggttcgatactccaacacctctttcttttccactgtttctacacgtcctggtgtttttataa |
20128163 |
T |
|
| Q |
150 |
tgaacagc |
157 |
Q |
| |
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|||||||| |
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|
| T |
20128162 |
tgaacagc |
20128155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 157
Target Start/End: Original strand, 22204608 - 22204715
Alignment:
| Q |
50 |
ttatccaaacgagctgtaatctggtacgacgagtgcatggttcgatattccaacacctcttttttctccaccgtggctacaaggcctggcgttttcatga |
149 |
Q |
| |
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||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||| || ||||| || ||||| | ||||| ||||| || | |
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| T |
22204608 |
ttatccaaacgagctgtcatttggtacgaggagtgcatggttcgatactccaacacctctttcttttccactgtttctacacgtcctggtgtttttataa |
22204707 |
T |
|
| Q |
150 |
tgaacagc |
157 |
Q |
| |
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|||||||| |
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|
| T |
22204708 |
tgaacagc |
22204715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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