View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_low_14 (Length: 401)
Name: NF11530_low_14
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 386
Target Start/End: Complemental strand, 38146288 - 38145919
Alignment:
| Q |
11 |
catagggacaatcacattcatgggaattcaatgaggattaggaatttattatgttgtataagctgaagggtgaaaaaggatatgcagtggtggcaataac |
110 |
Q |
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| T |
38146288 |
cataaggacaatcacattcatcggaattcaatgagga------atttatcatgttgtataagctgaagggtgaaaaaggatatgcagtggtggcaataac |
38146195 |
T |
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| Q |
111 |
attagccaactgagagggaaatttagctcaatcattgtacaaagctgtgcttattgtatatcatacgatccgccataagttaatactccattttcaaagt |
210 |
Q |
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| T |
38146194 |
attagccaattgagagggaaatttagctcaatcattgtacaaagctgtgcttattgtatatcatacgatctgccataagttaatactccattttcaaagt |
38146095 |
T |
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| Q |
211 |
tatgttacatacaacaacttttttgaagcacttgcttccattttttattccaaccattaaggcaattacaacttattttcatttacttcactgcaacacc |
310 |
Q |
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| T |
38146094 |
tatgttacatacaacaacatttttgaagcacttgcttccattttttattccaaccattaaggcaattacaacttattttcatttacttcactgcaacacc |
38145995 |
T |
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| Q |
311 |
aattaataacttgttggatttttattgttcatcatcaatttaaactagttatggtgatgattttttactagagatt |
386 |
Q |
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| T |
38145994 |
aattaataacttgttggatttttattgttcatcatcaatttaaactagttatggtgatgattttttattagagatt |
38145919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 259 - 377
Target Start/End: Complemental strand, 38136033 - 38135919
Alignment:
| Q |
259 |
tccaaccattaaggcaattacaacttattttcatttacttcactgcaacaccaattaataacttgttggatttttattgttcatcatcaatttaaactag |
358 |
Q |
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| T |
38136033 |
tccaaccattaaggcaatcacaacttattttcatttactt----gcaacgccaattaataactagttggattttgattgttcatcaacaattataactag |
38135938 |
T |
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| Q |
359 |
ttatggtgatgatttttta |
377 |
Q |
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| T |
38135937 |
ttatggtgatgatttttta |
38135919 |
T |
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