View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_low_18 (Length: 393)
Name: NF11530_low_18
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 386
Target Start/End: Complemental strand, 42193103 - 42192727
Alignment:
| Q |
8 |
caattcaagcacgttcaaaaacacagtctctctatttgtcacactatttttaacatggcagcagagttctaaacaaagggcctcagcttcctcgataagc |
107 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42193103 |
caattcaagcacattcaaaaacacagtctctctttttgtcac--tatttttaacacggcagcagagttctaaactaagggcctcagcttcctcgataagc |
42193006 |
T |
|
| Q |
108 |
ttaacacctatttgttttcacgtccaacttctagtcaatgtgtgtccaccttgaatctacaaggtgtagcttctctatctccacgcagaattgtcctaaa |
207 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42193005 |
ttaacacctctttgttttcacgtccaacttctagtcaatgtgtgtccaccttgaatctacaaggtgtagcttctctatctccacgcagaattgtcctaaa |
42192906 |
T |
|
| Q |
208 |
acgcgagaaaagatgagaggaacgtcaaaccaaacactcacttaatcatataatattctggtcgggcaccttgtgctgtcaaacatgatttaagcttgac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42192905 |
acgcgagaaaagatgagaggaacgtcaaaccaaacactcacttaatcatataatattctggtcgggcaccttgtgctgtcaaacatgatttaagcttgac |
42192806 |
T |
|
| Q |
308 |
tgggcaccttgtgatgtcaagagccttgttggccaaggtaggagtcggcctgaggagcagagcagaaaccctaagatct |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42192805 |
tgggcaccttgtgatgtcaagagccttgttggccaaggtaggagtcggcctgaggagcagagcagaaaccctaagatct |
42192727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 3561854 - 3561972
Alignment:
| Q |
8 |
caattcaagcacgttcaaaaacacagtctctctatttgtcacactatttttaacatggcagcagagtt-ctaaacaaagggcctcagcttcctcgataag |
106 |
Q |
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|||||||||||| ||| |||| ||||||||| |||| |||||||||||||||||||||||||||||| |||| | ||| | |||||||||||||||||| |
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| T |
3561854 |
caattcaagcacattcgaaaa-acagtctct--atttttcacactatttttaacatggcagcagagttcctaatctaagagactcagcttcctcgataag |
3561950 |
T |
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| Q |
107 |
cttaacacctatttgttttcac |
128 |
Q |
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|||| | ||| ||||||||||| |
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| T |
3561951 |
cttagcccctgtttgttttcac |
3561972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 527012 - 527061
Alignment:
| Q |
337 |
tggccaaggtaggagtcggcctgaggagcagagcagaaaccctaagatct |
386 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
527012 |
tggccaaggtaggagtcggcctaaggagcagagcagaaaccctaagatct |
527061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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