View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_low_19 (Length: 383)
Name: NF11530_low_19
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 11 - 367
Target Start/End: Original strand, 4036295 - 4036651
Alignment:
| Q |
11 |
cagagaagttaagagacttgaaacttggcaagcagtaagaaaatgtggactgatagaggttttgggtttgagacaaaagtgacaacgggcctcggcccaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4036295 |
cagagaagttaagagacttgaaacttggcaagcagtaagagaatgtggactgatagaggttttgggtttgagacaaaagtgacaacgggcctcggcccaa |
4036394 |
T |
|
| Q |
111 |
gcccaatagaccttgtggtggggcagaggtgcctgtggtttttgaaacacaaccgaatgtgtagctaggaactgggtcagtggctaaggtaatagtgtct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4036395 |
gcccaatagaccttgtggtggggcagaggtgcctgtggtttttgaaacacaaccgaatgtgtagctaggaacggggtcagtggctaaggtaatagtgtct |
4036494 |
T |
|
| Q |
211 |
tgtaccaagttagctgcaatagaggaactgccataggttaggttgaaattgcatgagctcacaccacaaccagggttaggtacctgaaaaatgaaacaaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4036495 |
tgtaccaagttagctgcaatagaggaactgccataggttaggttgaaattgcatgagctcacaccacaaccagggttaggtacctgaaaaatgaaacaaa |
4036594 |
T |
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| Q |
311 |
ataaaatgttcacattaataccaatgtttcaaaaatgagataggagaatgaattaat |
367 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4036595 |
ataaaatgtttacattaataccaatgtttcaaaaatgagataggagaatgaattaat |
4036651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 367
Target Start/End: Complemental strand, 13951408 - 13951053
Alignment:
| Q |
11 |
cagagaagttaagagacttgaaacttggcaagcagtaagaaaatgtggactgatagaggttttgggtttgagacaaaagtgacaacgggcctcggcccaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13951408 |
cagagaagttaagagacttgaaacttggcaagcaataagagaatgtggactgatagaggttttgggtttgagacaaaagtgacaacgggcctcggcccaa |
13951309 |
T |
|
| Q |
111 |
gcccaatagaccttgtggtggggcagaggtgcctgtggtttttgaaacacaaccgaatgtgtagctaggaactgggtcagtggctaaggtaatagtgtct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13951308 |
gcccaatagaccttgtggtggggcagaggtgcctgtggtttttgaaacacaaccgaatgtgtagctaggaactgggtcggtggctaaggtaatagtgtct |
13951209 |
T |
|
| Q |
211 |
tgtaccaagttagctgcaatagaggaactgccataggttaggttgaaattgcatgagctcacaccacaaccagggttaggtacctgaaaaatgaaacaaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13951208 |
tgtaccaagttagctgcaatagaggaactgccataggttaggttgaaattgcatgagctcacaccacaaccagggttaggtacctgaaaaatgaaacaaa |
13951109 |
T |
|
| Q |
311 |
ataaaatgttcacattaataccaatgtttcaaaaatgagataggagaatgaattaat |
367 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13951108 |
ataaaatgttcacattaataccaatgtttcaaaaatgagat-ggagaatgaattaat |
13951053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 14703837 - 14703608
Alignment:
| Q |
16 |
aagttaagagacttgaaacttggcaagcagtaagaaaatgtggactgatagaggttttgggtttgagacaaaagtgacaacgggcctcggcccaagccca |
115 |
Q |
| |
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||||||| ||||| || || ||||| |||||||| |||||||||| ||||| |||||| |||| ||||| || ||||| ||||||||||||||||||| |
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| T |
14703837 |
aagttaatcgacttaaagctaggcaaacagtaagagaatgtggacttgtagagattttggctttgggacaagagcgacaatgggcctcggcccaagccca |
14703738 |
T |
|
| Q |
116 |
atagaccttgtggtggggcagaggtgcctgtggtttttgaaacacaaccgaatgtgtagctaggaactgggtcagtggctaaggtaatagtgtcttgtac |
215 |
Q |
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|||| |||||| |||| || || | ||||| ||||| |||||| || || ||||| | |||| ||||||||| |||| ||||| |||||||| || |
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| T |
14703737 |
atagcccttgttgtggtgctgaacttcctgttgttttgttaacacagccaaaagtgtaccctggaattgggtcagttgctagggtaagtgtgtcttggac |
14703638 |
T |
|
| Q |
216 |
caagttagctgcaatagaggaactgccata |
245 |
Q |
| |
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|| |||||||||| || ||||| ||||| |
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| T |
14703637 |
cacactagctgcaatggaagaactaccata |
14703608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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