View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11530_low_20 (Length: 378)
Name: NF11530_low_20
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_low_20 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 9 - 378
Target Start/End: Original strand, 42673876 - 42674245
Alignment:
| Q |
9 |
agcagcagagattgcgacaggccttcttttccttcaccagacaaaaccagaaccggttgtgcatcgcgatctcaaaccagcaaacattctcttagacaga |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42673876 |
agcatcagagattgcgacaggccttcttttccttcaccagacaaaaccagaaccggttgtgcatcgcgatctcaaaccagcaaacattctcttagacaga |
42673975 |
T |
|
| Q |
109 |
aactacgtaagcaagatcagcgatgttggtttggcaaggcttgttccaccttctgtagaaaacaaaactaccgaatatcacaagacaaatgcagccggaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42673976 |
aactacgtaagcaagatcagcgatgttggtttggcaaggcttgttccaccttctgtagaaaacaaaactaccgaatatcacaagacaaatgcagccggaa |
42674075 |
T |
|
| Q |
209 |
cannnnnnnatattgatccggagtatcaacaaacaggactattgggcgtaaaatcagacatatattcattaggtgttatacttccacaaatcattactgg |
308 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
42674076 |
catttttttatattgatccggagtatcaacaaacaggactattgggcgtaaaatcagacatatattcattaggtgttatgcttctacaaatcattactgg |
42674175 |
T |
|
| Q |
309 |
aaagcctccaatgggtgttgctcaccttgttgaggaggccattcagaatgataatcttgcaaaggtgctt |
378 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42674176 |
aaagactccaatgggtgttgctcaccttgttgaggaggccattcagaatgataatcttgcaaaggtgctt |
42674245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 6516734 - 6517042
Alignment:
| Q |
16 |
gagattgcgacaggccttcttttccttcaccagacaaaaccagaaccggttgtgcatcgcgatctcaaaccagcaaacattctcttagacagaaactacg |
115 |
Q |
| |
|
|||||||| || |||||||||||||||||||| |||| ||||| || | || ||||| ||| | ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
6516734 |
gagattgccactggccttcttttccttcaccaatcaaagccagatccaatagtacatcgtgatatgaaaccaggaaacattctcttagacaaaaactacg |
6516833 |
T |
|
| Q |
116 |
taagcaagatcagcgatgttggtttggcaaggcttgttccaccttctgtagaaaacaaaactaccgaatatcacaagacaaatgcagccggaacannnnn |
215 |
Q |
| |
|
| ||||||||||| |||||||||||||| | || ||||| |||| ||| |||||||| || |||||| || |||| ||||| |||||| |
|
|
| T |
6516834 |
ttagcaagatcagtgatgttggtttggcgcgactcgttcctgcttcaatagccaacaaaaccactcaatatcgcatgacaggcgcagctggaacattttg |
6516933 |
T |
|
| Q |
216 |
nnatattgatccggagtatcaacaaacaggactattgggcgtaaaatcagacatatattcattaggtgttatacttccacaaatcattactggaaagcct |
315 |
Q |
| |
|
| |||||||| |||||||||||||| ||| ||||||| || |||||||| |||| |||||| ||| | || | | |||||| || |||| ||||||| |
|
|
| T |
6516934 |
ctacattgatcctgagtatcaacaaactggattattgggtgtgaaatcagatatattttcatttggtatgattttgctacaaattatcactgcaaagcct |
6517033 |
T |
|
| Q |
316 |
ccaatgggt |
324 |
Q |
| |
|
||||||||| |
|
|
| T |
6517034 |
ccaatgggt |
6517042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 35083199 - 35083066
Alignment:
| Q |
31 |
cttcttttccttcaccagacaaaaccagaaccggttgtgcatcgcgatctcaaaccagcaaacattctcttagacagaaactacgtaagcaagatcagcg |
130 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||| || | ||||| | ||||||| | | ||| ||||||| || |||||||| | | |
|
|
| T |
35083199 |
cttcttttccttcaccagactaaaccagaaccgattgtgcatcgtgacttaaaacctggaaacattttgcttgaccgaaactatgtgagcaagattggtg |
35083100 |
T |
|
| Q |
131 |
atgttggtttggcaaggcttgttccaccttctgt |
164 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| |
|
|
| T |
35083099 |
atgttggtttagcaaggcttgttcctccttctgt |
35083066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 166
Target Start/End: Original strand, 3686574 - 3686709
Alignment:
| Q |
31 |
cttcttttccttcaccagacaaaaccagaaccggttgtgcatcgcgatctcaaaccagcaaacattctcttagacagaaactacgtaagcaagatcagcg |
130 |
Q |
| |
|
||||||||||||||||| |||||||||||| | |||| ||| | || || |||||||| |||||||||||||||| ||| | || ||||| || || | |
|
|
| T |
3686574 |
cttcttttccttcaccaaacaaaaccagaagcaattgttcatagagaccttaaaccagccaacattctcttagacaaaaattttgttagcaaaataagtg |
3686673 |
T |
|
| Q |
131 |
atgttggtttggcaaggcttgttccaccttctgtag |
166 |
Q |
| |
|
|||||||||| ||||| | || ||||||||||||| |
|
|
| T |
3686674 |
atgttggtttagcaagattagtaccaccttctgtag |
3686709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 48235948 - 48235835
Alignment:
| Q |
9 |
agcagcagagattgcgacaggccttcttttccttcaccagacaaaaccagaaccggttgtgcatcgcgatctcaaaccagcaaacattctcttagacaga |
108 |
Q |
| |
|
|||||| |||||||| || | ||||||||||||||||| ||||| ||||| || | |||||||| || || |||||| |||||||| | ||||||| | |
|
|
| T |
48235948 |
agcagctgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaa |
48235849 |
T |
|
| Q |
109 |
aactacgtaagcaa |
122 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
48235848 |
aattacgtgagcaa |
48235835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University