View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11530_low_22 (Length: 362)

Name: NF11530_low_22
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11530_low_22
NF11530_low_22
[»] chr5 (3 HSPs)
chr5 (17-342)||(7091860-7092183)
chr5 (140-362)||(7104101-7104323)
chr5 (17-144)||(7098979-7099106)
[»] chr3 (2 HSPs)
chr3 (278-342)||(39683317-39683381)
chr3 (278-342)||(54368487-54368550)
[»] chr8 (1 HSPs)
chr8 (41-135)||(33407703-33407797)
[»] chr2 (3 HSPs)
chr2 (278-342)||(2029740-2029803)
chr2 (278-342)||(33606104-33606167)
chr2 (278-342)||(37840308-37840371)
[»] chr7 (1 HSPs)
chr7 (278-357)||(6001468-6001548)
[»] chr4 (1 HSPs)
chr4 (278-342)||(35609540-35609603)
[»] chr1 (1 HSPs)
chr1 (278-342)||(51459880-51459943)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 342
Target Start/End: Original strand, 7091860 - 7092183
Alignment:
Q  17 acttggatatccatttgttcctttacagttttccatgtctagcgaccgaccttaccataaatcctgctacagggagaagtatcacccaagatgtgatgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7091860 acttggatatccatttgttcctttacagttttccatgtctagcaaccgtccttaccataaatcctgctacagggagaagcatcacccaagatgtgatgtt 7091959  T
Q  117 tgcaagaattttgtaagtatctcagcaggagtctttgacttgcagttgtctattagagtttttcaatttactatcaaagttttctcttatcatggacatg 216  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||    
T  7091960 tgcaagaattttgtaagtatctcagcaggaatctttcacttgcagttgtctattaaagtttttcaatttactatcaaagtagtctcttatcatggacatg 7092059  T
Q  217 cttttgaaatttcgctacaatgtacacatgctttggctagtaatgatattaagcagtgtaaaagagtcccacatcggatagcagatgacctaaacatgtg 316  Q
    |||||||||||||||| ||||||||| ||||| ||||| ||||||||||| ||| ||||||||||||||||||| ||||| |||||| ||  ||||||||    
T  7092060 cttttgaaatttcgctgcaatgtacatatgctctggctggtaatgatattgagctgtgtaaaagagtcccacattggataacagatggcccgaacatgtg 7092159  T
Q  317 tttagagagtggaggcaatcctcacc 342  Q
    |||  ||||||| |||||||||||||    
T  7092160 ttt--agagtgggggcaatcctcacc 7092183  T

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Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 140 - 362
Target Start/End: Original strand, 7104101 - 7104323
Alignment:
Q  140 agcaggagtctttgacttgcagttgtctattagagtttttcaatttactatcaaagttttctcttatcatggacatgcttttgaaatttcgctacaatgt 239  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7104101 agcaggagtctttcacttgcagttgtctattagagtttttcaatttactatcaaagttttctcttatcatggacatgcttttgaaatttcgctacaatgt 7104200  T
Q  240 acacatgctttggctagtaatgatattaagcagtgtaaaagagtcccacatcggatagcagatgacctaaacatgtgtttagagagtggaggcaatcctc 339  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7104201 acacatgctttggctagtaatgatattaagccgtgtaaaagagtcccacatcggatagcagatgacctaaacatgtgtttagagagtggaggcaatcctc 7104300  T
Q  340 accacagaccgattttgtgggga 362  Q
    |||||| |||| |||||||||||    
T  7104301 accacaaaccggttttgtgggga 7104323  T

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Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 7098979 - 7099106
Alignment:
Q  17 acttggatatccatttgttcctttacagttttccatgtctagcgaccgaccttaccataaatcctgctacagggagaagtatcacccaagatgtgatgtt 116  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098979 acttggatatacatttgttcctttacagttttccatgtctagcaaccgaccttaccataaatcctgctacagggagaagtatcacccaagatgtgatgtt 7099078  T
Q  117 tgcaagaattttgtaagtatctcagcag 144  Q
    ||||||||||||||||||||||||||||    
T  7099079 tgcaagaattttgtaagtatctcagcag 7099106  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 39683381 - 39683317
Alignment:
Q  278 aagagtcccacatcggatagcagatgacctaaacatgtgtttagagagtggaggcaatcctcacc 342  Q
    ||||||||||||||||||||  |||||||| |  ||||||||| | |||||||||||||||||||    
T  39683381 aagagtcccacatcggatagatgatgacctgacaatgtgtttataaagtggaggcaatcctcacc 39683317  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 342
Target Start/End: Original strand, 54368487 - 54368550
Alignment:
Q  278 aagagtcccacatcggatagcagatgacctaaacatgtgtttagagagtggaggcaatcctcacc 342  Q
    |||||||||||||| ||||| ||||| ||| || ||||||||| | ||||| |||||||||||||    
T  54368487 aagagtcccacatccgatagaagatggcctgaaaatgtgtttata-agtgggggcaatcctcacc 54368550  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 135
Target Start/End: Complemental strand, 33407797 - 33407703
Alignment:
Q  41 acagttttccatgtctagcgaccgaccttaccataaatcctgctacagggagaagtatcacccaagatgtgatgtttgcaagaattttgtaagta 135  Q
    ||||| |||||||||| |  | || |||||||||||||| ||||| | ||||  | |||||||||| ||||||||||||||||  ||||||||||    
T  33407797 acagtattccatgtctgggaatcgtccttaccataaatcatgctataaggagctgcatcacccaaggtgtgatgtttgcaagatctttgtaagta 33407703  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 342
Target Start/End: Original strand, 2029740 - 2029803
Alignment:
Q  278 aagagtcccacatcggatagcagatgacctaaacatgtgtttagagagtggaggcaatcctcacc 342  Q
    |||||||||||||||||||| | ||||||| |  ||||||||| | |||||||||||||||||||    
T  2029740 aagagtcccacatcggataggacatgacctgacaatgtgtttata-agtggaggcaatcctcacc 2029803  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 33606167 - 33606104
Alignment:
Q  278 aagagtcccacatcggatagcagatgacctaaacatgtgtttagagagtggaggcaatcctcacc 342  Q
    |||||||||||||||||||| ||||| ||| || ||||||||| | ||| | |||||||||||||    
T  33606167 aagagtcccacatcggataggagatggcctgaaaatgtgtttata-agtaggggcaatcctcacc 33606104  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 342
Target Start/End: Original strand, 37840308 - 37840371
Alignment:
Q  278 aagagtcccacatcggatagcagatgacctaaacatgtgtttagagagtggaggcaatcctcacc 342  Q
    ||||||||||||| |||||| ||||||||| |  ||||||||| | ||||||||||||| |||||    
T  37840308 aagagtcccacattggataggagatgacctgacaatgtgtttata-agtggaggcaatcatcacc 37840371  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 357
Target Start/End: Complemental strand, 6001548 - 6001468
Alignment:
Q  278 aagagtcccacatcggatagcagatgacctaaacatgtgtttagagagtggaggcaatcctcaccacag--accgattttgt 357  Q
    |||||||||||||||||||| ||||||||| |  || |||||| | ||||| ||||||||||||| |||  |||||||||||    
T  6001548 aagagtcccacatcggatagaagatgacctgacaatatgtttata-agtgggggcaatcctcacctcagaaaccgattttgt 6001468  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 35609603 - 35609540
Alignment:
Q  278 aagagtcccacatcggatagcagatgacctaaacatgtgtttagagagtggaggcaatcctcacc 342  Q
    ||||||||||||| |||| | ||||| |||||||| ||||||| | ||||| |||||||||||||    
T  35609603 aagagtcccacattggatgggagatggcctaaacaagtgtttata-agtgggggcaatcctcacc 35609540  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 51459943 - 51459880
Alignment:
Q  278 aagagtcccacatcggatagcagatgacctaaacatgtgtttagagagtggaggcaatcctcacc 342  Q
    ||||||||||||||||||||  |||| |||||  ||||||||| | ||||| |||||||||||||    
T  51459943 aagagtcccacatcggataggtgatggcctaacaatgtgtttata-agtgggggcaatcctcacc 51459880  T

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