View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_low_23 (Length: 362)
Name: NF11530_low_23
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_low_23 |
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| [»] scaffold0415 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 25554711 - 25555066
Alignment:
| Q |
18 |
agttaggctggctacc-ttaggcttctcattaatattannnnnnngttgagcaaagactatatatg----atagtctagaacgtggtagcacttggatga |
112 |
Q |
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| T |
25554711 |
agttaggttggctacccttaggcttctcattaatattatttttttgttgaggaaagactatatataggctatagtctagaacgtggtagcacttggatga |
25554810 |
T |
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| Q |
113 |
cattggagtgtcaatgtcacaatgtcattggaatgtcagtgtcatttgatattggtcaatcacaatgttacacgtttacaaaataat------------- |
199 |
Q |
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| T |
25554811 |
cattggagtgtcaatgtcacaatgtcattggagtgtcagtgtcatttgatattgatcaatcacaatgttacacgtttacaaaataataaaaaatccttat |
25554910 |
T |
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| Q |
200 |
----aaaaaatccttatgagtggccatttttcgtaaaaatattgttataaatttctacatcctattgtttggataaacaaaacattcacgatttccaact |
295 |
Q |
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| T |
25554911 |
gataaaaaaatccttatgagtggccatttttcataaaaatattgttataaacttctacatcctattgtttggataaacaaaacattcacgattttcaact |
25555010 |
T |
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| Q |
296 |
ttgttatgcaaaagggtctaacgatacagtttgttgcccgtttacctgttgttcat |
351 |
Q |
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| T |
25555011 |
ttgttatgcaaaagggtctaacgattcagtttgttggccgcttgcctgttgttcat |
25555066 |
T |
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Target: scaffold0415 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 12523 - 12482
Alignment:
| Q |
98 |
gtagcacttggatgacattggagtgtcaatgtcacaatgtca |
139 |
Q |
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| T |
12523 |
gtagcacttgaatgatattggagtgtcaatgtcacaatgtca |
12482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 42494907 - 42494842
Alignment:
| Q |
152 |
tgtcatttgatattggtcaatcacaatgttacacgtttacaaaataataaaaaatccttatgagtg |
217 |
Q |
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| T |
42494907 |
tgtcatgtgacattggtcaaccacaatgttacaagtatacaaaaaaattaaaaatccttgtgagtg |
42494842 |
T |
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Back To:
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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 29846946 - 29846987
Alignment:
| Q |
98 |
gtagcacttggatgacattggagtgtcaatgtcacaatgtca |
139 |
Q |
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| T |
29846946 |
gtagcacttgaatgatattggagtgtcaatgtcacaatgtca |
29846987 |
T |
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