View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_low_24 (Length: 351)
Name: NF11530_low_24
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 53865898 - 53866221
Alignment:
| Q |
18 |
gcatttgtattgagaaaatgtttgcatgatatagttatatacttatatggacttaatgaacaggtaaacgttccggttatagtcgctgcctgcaagcttg |
117 |
Q |
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| T |
53865898 |
gcatttgcattgagaaaatgtttgcatgatatagttatatacttatatggacttaatgaacaggtaaacgttccggttatagtcgctgcctgcaagcttg |
53865997 |
T |
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| Q |
118 |
acttacaacatgataatcaagaggagagcttagaagacgttgaaatcactattcgttgttcagcatatacaactataggggtatatatatatccttcata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53865998 |
acttacaacatgataatcaagaggagagcttagaagacgttgaaatcactattcgttgttcagcatatacaactatgggggtatatatatatccttcata |
53866097 |
T |
|
| Q |
218 |
ttattacaatcaacaacttcattgttttcaaatattattattaaaaaagtatttcactttacttttcttattgaaggtcgctgatgttttcacctttgca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53866098 |
ttattacaatcaacaacttcattgttttcaaatattattattaaaaaagtatttcactttacttttcttattgaaggtcgctgatgttttcacctttgca |
53866197 |
T |
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| Q |
318 |
caatattctgtcaattgtcctttg |
341 |
Q |
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|||||||||||||||||||||||| |
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| T |
53866198 |
caatattctgtcaattgtcctttg |
53866221 |
T |
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