View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_low_25 (Length: 350)
Name: NF11530_low_25
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 30 - 335
Target Start/End: Original strand, 34919967 - 34920272
Alignment:
| Q |
30 |
tatcatcaagatccaaatcaaaatagtctaaaacagtatcaactctatcttcaaaactaacagaaccattataatgtttacaatacttaacatcatcaca |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34919967 |
tatcatcaagatccaaatcaaaatagtctaaaacagtatcaactctatcttcaaaactaacagaaccattataatgtttacaatacttaacatcatcaca |
34920066 |
T |
|
| Q |
130 |
agtccaagaaccnnnnnnnacctcagagccaggccagaagtaagtagcagcaattttaccactgttgacaacagtttgccataagggctgaccaagccac |
229 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34920067 |
agtccaagaacctttttttacctcagagccaggccaaaagtaagtagcagcaattttaccactgttgacaacagtttgccataagggctgaccaagccac |
34920166 |
T |
|
| Q |
230 |
cattttgattcatggctagccatggtgaatttttctccggtaaccggatcgaaaaagaagttgttgatgataccatgatgaggagggtagagaccagtga |
329 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34920167 |
cattttgattcatggctagccatggtgaatttttcgccggtaaccggatcgaaaaagaagttgttgatgataccatgatgaggagggtagagaccagtga |
34920266 |
T |
|
| Q |
330 |
caatgg |
335 |
Q |
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|||||| |
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| T |
34920267 |
caatgg |
34920272 |
T |
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