View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11530_low_27 (Length: 341)

Name: NF11530_low_27
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11530_low_27
NF11530_low_27
[»] chr4 (8 HSPs)
chr4 (25-300)||(9593409-9593685)
chr4 (25-319)||(9581610-9581892)
chr4 (25-319)||(9587305-9587587)
chr4 (25-306)||(9602199-9602494)
chr4 (200-321)||(9606069-9606190)
chr4 (123-289)||(9569616-9569780)
chr4 (25-138)||(9569360-9569473)
chr4 (79-146)||(54291085-54291150)
[»] chr7 (1 HSPs)
chr7 (88-210)||(42446568-42446690)
[»] chr6 (3 HSPs)
chr6 (79-186)||(32740480-32740587)
chr6 (79-193)||(29131530-29131643)
chr6 (88-212)||(29145527-29145651)
[»] scaffold0054 (2 HSPs)
scaffold0054 (89-152)||(39601-39664)
scaffold0054 (89-152)||(33250-33313)
[»] chr5 (1 HSPs)
chr5 (91-124)||(43323021-43323054)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 25 - 300
Target Start/End: Complemental strand, 9593685 - 9593409
Alignment:
Q  25 ttaagtactcaaacgattgtggagcttgcttacaaagaagtgaactgtattgaccggatagtcatatacaaggaaaacattcttccaattggaggaataa 124  Q
    |||| |||||||||||||||| ||||||||| |||| ||||||| | |||||| |||||| | |||||||||||||||||||||||||||||||||||||    
T  9593685 ttaaatactcaaacgattgtgaagcttgcttgcaaaaaagtgaattctattgatcggatattaatatacaaggaaaacattcttccaattggaggaataa 9593586  T
Q  125 gtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattacattgtatgcgaagtgtcttgtcaattagaa-tctcgga 223  Q
    ||| ||||||||||| |||||||||||| ||||||||||||| ||||  ||||| ||||||| |||||||| |||||||||||||||| ||| || | ||    
T  9593585 gtaattagttattttccttgttttcaccaggagcaaaatgatcgtggtgattggaatattaccttgtatgcaaagtgtcttgtcaattggaattccctga 9593486  T
Q  224 gattgattgaatctgtagcgggccattatccttgtatcgttgctgatgcttatgtccttctgtttttggctcatctg 300  Q
    ||||| ||||||| |||||||| |||||||||||||| |||||| ||||||||||  || ||||||| |||||||||    
T  9593485 gattgcttgaatcggtagcgggtcattatccttgtattgttgctcatgcttatgtggttttgttttttgctcatctg 9593409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 25 - 319
Target Start/End: Complemental strand, 9581892 - 9581610
Alignment:
Q  25 ttaagtactcaaacgattgtggagcttgcttacaaagaagtgaactgtattgaccggatagtcatatacaaggaaaacattcttccaattggaggaataa 124  Q
    ||||||||||||| |||||||||||||||||||||||||||||| | |||||| |||||||| || ||||||| ||||||||||||||||||||||||||    
T  9581892 ttaagtactcaaatgattgtggagcttgcttacaaagaagtgaattctattgatcggatagtaatgtacaagg-aaacattcttccaattggaggaataa 9581794  T
Q  125 gtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattacattgtatgcgaagtgtcttgtcaattagaatctcggag 224  Q
    ||| ||||||||||||         ||| |||| |||||||||||||  ||||||||||||| || ||| | |||||||||||||||| ||||  | |||    
T  9581793 gtaattagttattttt---------accaggagtaaaatgattgtggtgattgggatattaccttatatacaaagtgtcttgtcaatttgaattccagag 9581703  T
Q  225 attgattgaatctgtagcgggccattatccttgtatcgttgctgatgcttatgtccttctgtttttggctcatctgttgctgcttttctggtctg 319  Q
    || | ||||||| ||||| ||||||| |||||||||||| ||||||| || |||  ||||| |||||||||||||| ||||| ||||||||||||    
T  9581702 atcgcttgaatcggtagcaggccattgtccttgtatcgtcgctgatgattctgtggttctg-ttttggctcatctggtgctg-ttttctggtctg 9581610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 25 - 319
Target Start/End: Complemental strand, 9587587 - 9587305
Alignment:
Q  25 ttaagtactcaaacgattgtggagcttgcttacaaagaagtgaactgtattgaccggatagtcatatacaaggaaaacattcttccaattggaggaataa 124  Q
    ||||||||||||| |||||||||||||||||||||||||||||| | |||||| |||||||| || ||||||| ||||||||||||||||||||||||||    
T  9587587 ttaagtactcaaatgattgtggagcttgcttacaaagaagtgaattctattgatcggatagtaatgtacaagg-aaacattcttccaattggaggaataa 9587489  T
Q  125 gtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattacattgtatgcgaagtgtcttgtcaattagaatctcggag 224  Q
    ||| ||||||||||||         ||| |||| |||||||||||||  ||||||||||||| || ||| | |||||||||||||||| ||||  | |||    
T  9587488 gtaattagttattttt---------accaggagtaaaatgattgtggtgattgggatattaccttatatacaaagtgtcttgtcaatttgaattccagag 9587398  T
Q  225 attgattgaatctgtagcgggccattatccttgtatcgttgctgatgcttatgtccttctgtttttggctcatctgttgctgcttttctggtctg 319  Q
    || | ||||||| ||||| ||||||| |||||||||||| ||||||| || |||  ||||| |||||||||||||| ||||| ||||||||||||    
T  9587397 atcgcttgaatcggtagcaggccattgtccttgtatcgtcgctgatgattctgtggttctg-ttttggctcatctggtgctg-ttttctggtctg 9587305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 25 - 306
Target Start/End: Complemental strand, 9602494 - 9602199
Alignment:
Q  25 ttaagtactcaaacgattgtggagcttgcttacaaagaagtgaactgtattgaccgg-------atagtcatatacaaggaaaacattcttccaattgga 117  Q
    |||||||||||| || ||||||||||| |||||||||||||||| | |||||| ||        ||| | |||||||||||||||||||||||||| |||    
T  9602494 ttaagtactcaatcggttgtggagctttcttacaaagaagtgaattctattgatcgtcgatcgaatactaatatacaaggaaaacattcttccaatcgga 9602395  T
Q  118 ggaataagtatttagttatttttcttgttttcacctggagcaaaatg-------attgtggccattgggatattacattgtatgcgaagtgtcttgtcaa 210  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||       ||||  |  ||||||||||||| |||||||| ||||||||||||||    
T  9602394 ggaataagtaattagttatttttcttgttttcaccaggagcaaaatgcaaaatgattgcagtgattgggatattaccttgtatgcaaagtgtcttgtcaa 9602295  T
Q  211 ttagaatctcggagattgattgaatctgtagcgggccattatccttgtatcgttgctgatgcttatgtccttctgtttttggctcatctgttgctg 306  Q
    || ||| | ||||||||  || |||| |||||||||||||||||||||||||| |||||||| ||| |  || ||||||||||||||||| |||||    
T  9602294 ttggaaccccggagatttcttaaatcggtagcgggccattatccttgtatcgtcgctgatgcatatatggttttgtttttggctcatctggtgctg 9602199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 200 - 321
Target Start/End: Complemental strand, 9606190 - 9606069
Alignment:
Q  200 tgtcttgtcaattagaatctcggagattgattgaatctgtagcgggccattatccttgtatcgttgctgatgcttatgtccttctgtttttggctcatct 299  Q
    ||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9606190 tgtcttgtcaattagaatctcggagattgcttgaatcggtagcgagccattatccttgtatcgttgctgatgcttatgtccttctgtttttggctcatct 9606091  T
Q  300 gttgctgcttttctggtctgtg 321  Q
    ||||||||||||||||||||||    
T  9606090 gttgctgcttttctggtctgtg 9606069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 123 - 289
Target Start/End: Original strand, 9569616 - 9569780
Alignment:
Q  123 aagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattacattgtatgcgaagtgtcttgtcaattagaatctcgg 222  Q
    ||||| |||||||||||||||||||||||  ||||||||||||||||||  ||||||||||||| |||||||| ||||||||||||  |  |||||  ||    
T  9569616 aagtaattagttatttttcttgttttcacgaggagcaaaatgattgtggtgattgggatattaccttgtatgcaaagtgtcttgtc--taggaatcctgg 9569713  T
Q  223 agattgattgaatctgtagcgggccattatccttgtatcgttgctgatgcttatgtccttctgtttt 289  Q
    |||||| || |||| |||||||||||||||||||||||||| ||||||||||||||  |||||||||    
T  9569714 agattgctttaatcggtagcgggccattatccttgtatcgtcgctgatgcttatgtggttctgtttt 9569780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 25 - 138
Target Start/End: Original strand, 9569360 - 9569473
Alignment:
Q  25 ttaagtactcaaacgattgtggagcttgcttacaaagaagtgaactgtattgaccggatagtcatatacaaggaaaacattcttccaattggaggaataa 124  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| | ||||||  ||||||| |||||||||||||| ||||||||||||||||||||||    
T  9569360 ttaagtactcaaatgattgtggagcttgtttacaaagaagtgaattctattgataggatagtaatatacaaggaaaatattcttccaattggaggaataa 9569459  T
Q  125 gtatttagttattt 138  Q
    ||| ||||||||||    
T  9569460 gtaattagttattt 9569473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 54291085 - 54291150
Alignment:
Q  79 cggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgtt 146  Q
    |||||| | ||||||||||||||||||||||| |||||| ||||  ||| ||| || |||||||||||    
T  54291085 cggataataatatacaaggaaaacattcttcccattggaagaat--gtaattaattgtttttcttgtt 54291150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 210
Target Start/End: Original strand, 42446568 - 42446690
Alignment:
Q  88 atatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattaca 187  Q
    ||||||||||||||||||||||||||||||||||||| || ||| || |||||||||||||||||  |||  | ||||||||||   ||| ||||||||     
T  42446568 atatacaaggaaaacattcttccaattggaggaataattaattaattgtttttcttgttttcaccaagaggtatatgattgtggttcttgagatattacc 42446667  T
Q  188 ttgtatgcgaagtgtcttgtcaa 210  Q
    |||||| | ||||  ||||||||    
T  42446668 ttgtatacaaagtcccttgtcaa 42446690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 32740587 - 32740480
Alignment:
Q  79 cggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgg 178  Q
    |||||| | |||||| |||| || ||||||| ||||||||||| ||||| |||||| ||||||||||||||||  |||| |||||||||  || ||||||    
T  32740587 cggataataatatacgaggataatattcttcaaattggaggaacaagtaattagttttttttcttgttttcactgggaggaaaatgatttcggtcattgg 32740488  T
Q  179 gatattac 186  Q
    ||||||||    
T  32740487 gatattac 32740480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 29131530 - 29131643
Alignment:
Q  79 cggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgg 178  Q
    |||||| | ||||||||||| |||||||||||||||||||||| |||||  ||||| || ||| |||||||||  |||| |||||||||| || ||||||    
T  29131530 cggataataatatacaaggataacattcttccaattggaggaacaagtaagtagtt-ttcttcctgttttcactgggaggaaaatgattgcggtcattgg 29131628  T
Q  179 gatattacattgtat 193  Q
    | |||||| ||||||    
T  29131629 gctattaccttgtat 29131643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 212
Target Start/End: Original strand, 29145527 - 29145651
Alignment:
Q  88 atatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattaca 187  Q
    |||||||||||| ||||||||||||||||||||  |||||  || || ||||||||||| |||||  |||  | ||||||||||   ||| |||||||||    
T  29145527 atatacaaggaatacattcttccaattggaggagcaagtagctaattgtttttcttgttatcaccaagaggtatatgattgtggttgttgagatattaca 29145626  T
Q  188 ttgtatgcgaagtgtcttgtcaatt 212  Q
    || ||||| || ||  |||||||||    
T  29145627 ttttatgcaaactggtttgtcaatt 29145651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 39664 - 39601
Alignment:
Q  89 tatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacc 152  Q
    ||||||||||||||||||||  ||||| ||||||||||| ||| ||||||||||||||||||||    
T  39664 tatacaaggaaaacattcttgtaattgaaggaataagtaattaattatttttcttgttttcacc 39601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 33313 - 33250
Alignment:
Q  89 tatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacc 152  Q
    |||||||||||||||||||| | |||| ||||||||||| ||| ||||||||| ||||||||||    
T  33313 tatacaaggaaaacattcttgccattgaaggaataagtaattaattatttttcatgttttcacc 33250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 43323021 - 43323054
Alignment:
Q  91 tacaaggaaaacattcttccaattggaggaataa 124  Q
    |||||||||||||| |||||||||||||||||||    
T  43323021 tacaaggaaaacatgcttccaattggaggaataa 43323054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University