View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_low_29 (Length: 326)
Name: NF11530_low_29
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 55161601 - 55161916
Alignment:
| Q |
1 |
ctttacggaggaggagttttcaatatcaaggacaagggtaatgctgttaacaacaccaacatcaacatgccttcttcacttgtcctctataatcttactt |
100 |
Q |
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| T |
55161601 |
ctttacggaggaggagttttcaatatcaaggacaagggtaatgctgttaacaacaccaacatcaacatgccttcttcacttgtcctctataatcttactt |
55161700 |
T |
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| Q |
101 |
acgacactatctattctttttctggtacgtttacgctccttc-------cttccattaaactctac----acacccttttg-ttttggttagtaaagtnn |
188 |
Q |
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| T |
55161701 |
acgacactatctattctttttctggtacgtttacgctccttccttccttcttccattaaactctacgcatgcacccttttgttttttgttagtaaagt-- |
55161798 |
T |
|
| Q |
189 |
nnnnnnnnnnnnnnnnagtatgggtgaaggttgaagattcagattcagttatgataaaggcaaagctagaaacagaaaatgagacatataactgtattgg |
288 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55161799 |
-tactactactactacagtatgggtgaaggttgaatattcagattcagttatgataaaggcaaagctagaaacagaaaatgagacatataactgtattgg |
55161897 |
T |
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| Q |
289 |
gacagttttggccaaacgt |
307 |
Q |
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||||||||||||||||||| |
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| T |
55161898 |
gacagttttggccaaacgt |
55161916 |
T |
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