View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_low_3 (Length: 559)
Name: NF11530_low_3
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_low_3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 559
Target Start/End: Complemental strand, 51579178 - 51578633
Alignment:
| Q |
17 |
cagtaccgtgcctactgtacgtaattttttagatggacaaaacttagctgcattttcttaggtgttttttcatttgcttcttgactaaaaatacnnnnnn |
116 |
Q |
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| T |
51579178 |
cagtaccgggcctactgtacgtaattttttagatggacaaaacttagctgcattttcttaggtgttttttcatttgcttcttgactaaaaatacattttt |
51579079 |
T |
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| Q |
117 |
nnnnnn---gctataacaaacttcnnnnnnnttatggatttgagaaaattatgtatagtttagttaagaaccatatgaatgtccttagatccttaaagga |
213 |
Q |
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| T |
51579078 |
tttttttttgctttaacaaacttcaaaaaaattatggatttgagaaaattatgtatagtttagttaagaaccatatgaatgtccttagatccttaaagga |
51578979 |
T |
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| Q |
214 |
tttatgttctgnnnnnnnnncttctaactacacttatgaaccttatctgttacatatgagctattttttaatgttgagctttacaaaattcacagttggt |
313 |
Q |
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| T |
51578978 |
tttatgttctgttttttt---ttctaactacacttatgaaccttatctgttacatatgagctattttttaatgttgagctttacaaaattcacagttggt |
51578882 |
T |
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| Q |
314 |
tgcagttaggatgattccatggg---aggcaaacctcaattatactgctcaggcgcttatcatgtctgctggtgcgatctcaacttaaatatgtgttaca |
410 |
Q |
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| T |
51578881 |
tgcagttaggatgattccatgggcaaaggcaaacctcaattatactgctcaggcgcttatcatatctgctggtgcgatctcaacttaaatttgtgttaca |
51578782 |
T |
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| Q |
411 |
agagcacttcgatcactgatcagttatatgttatcaaagtcagagagaacttcgatnnnnnnnntgccaccaaatttttaattaataggagtaaaagtgc |
510 |
Q |
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| T |
51578781 |
agagcacttcgatcactgatcagttatatgttatcaaagtcagagagaacttcaataaaaaaaatgccaccaaatttttaattaataggagtaaaagtgt |
51578682 |
T |
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| Q |
511 |
agcgttgttggtattaatgtatcnnnnnnnnagttaacaatctcattcc |
559 |
Q |
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| T |
51578681 |
agcgttgttggtattaatgtatcttttttttagttaacaatctcattcc |
51578633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 54126696 - 54126660
Alignment:
| Q |
49 |
atggacaaaacttagctgcattttcttaggtgttttt |
85 |
Q |
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| T |
54126696 |
atggacaaaacttaggtgcatttccttaggtgttttt |
54126660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 337 - 399
Target Start/End: Complemental strand, 302592 - 302530
Alignment:
| Q |
337 |
aggcaaacctcaattatactgctcaggcgcttatcatgtctgctggtgcgatctcaacttaaa |
399 |
Q |
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| T |
302592 |
aggcaaacctcaattataccgctcaggcacttatcatatctgctggtatgatctcgacttaaa |
302530 |
T |
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Back To:
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