View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11530_low_30 (Length: 324)

Name: NF11530_low_30
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11530_low_30
NF11530_low_30
[»] chr5 (11 HSPs)
chr5 (153-251)||(38178476-38178574)
chr5 (153-251)||(38205700-38205798)
chr5 (155-236)||(38156691-38156772)
chr5 (155-236)||(38221020-38221101)
chr5 (24-127)||(26032698-26032807)
chr5 (21-90)||(38181379-38181448)
chr5 (21-90)||(38189683-38189752)
chr5 (21-90)||(38216908-38216977)
chr5 (21-90)||(38456740-38456809)
chr5 (244-275)||(38156676-38156707)
chr5 (21-90)||(38208603-38208674)
[»] chr4 (1 HSPs)
chr4 (7-90)||(53350926-53351009)


Alignment Details
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 38178476 - 38178574
Alignment:
Q  153 tctagttaactgaaggaagttattaaagacaggaggttttgaatcatgaagctgtcatctgtaaatgaaatttcacttccataaagtatcaaaatttca 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | ||||||||||    
T  38178476 tctagttaactgaaggaagttattaaagacaggaggttttgaatcatgaagctgtcatctgttaatgaaatttcactttcataaagcaccaaaatttca 38178574  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 38205700 - 38205798
Alignment:
Q  153 tctagttaactgaaggaagttattaaagacaggaggttttgaatcatgaagctgtcatctgtaaatgaaatttcacttccataaagtatcaaaatttca 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | ||||||||||    
T  38205700 tctagttaactgaaggaagttattaaagacaggaggttttgaatcatgaagctgtcatctgttaatgaaatttcactttcataaagcaccaaaatttca 38205798  T

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Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 38156772 - 38156691
Alignment:
Q  155 tagttaactgaaggaagttattaaagacaggaggttttgaatcatgaagctgtcatctgtaaatgaaatttcacttccataa 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38156772 tagttaactgaaggaagttattaaagacaggaggttttgaatcatgaagctgtcatctgttaatgaaatttcacttccataa 38156691  T

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Target: chr5; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 38221101 - 38221020
Alignment:
Q  155 tagttaactgaaggaagttattaaagacaggaggttttgaatcatgaagctgtcatctgtaaatgaaatttcacttccataa 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  38221101 tagttaactgaaggaagttattaaagacaggaggttttgaatcatgaagctgtcatctgttaatgaaatttcactttcataa 38221020  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 26032698 - 26032807
Alignment:
Q  24 atccatcaagtcatcaagg---ttttcttcaacatcgtcctctaacgaaattgccttcttccctttt---tcaacgaaattggtctcagacaaatgcaca 117  Q
    |||||| ||||||||||||   ||| |||||||||||||||| |||||||| | |||||||||||||   ||||||||||| ||||||||||||| ||||    
T  26032698 atccatgaagtcatcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttcttccctttttcatcaacgaaatttgtctcagacaaatacaca 26032797  T
Q  118 tgcctagcat 127  Q
     |||||||||    
T  26032798 cgcctagcat 26032807  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 38181448 - 38181379
Alignment:
Q  21 caaatccatcaagtcatcaaggttttcttcaacatcgtcctctaacgaaattgccttcttccctttttca 90  Q
    ||||||||| || |||||||||||| |||||||||||||||| || ||||||| ||||||||||||||||    
T  38181448 caaatccatgaaatcatcaaggtttgcttcaacatcgtcctccaatgaaattggcttcttccctttttca 38181379  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 38189683 - 38189752
Alignment:
Q  21 caaatccatcaagtcatcaaggttttcttcaacatcgtcctctaacgaaattgccttcttccctttttca 90  Q
    ||||||||| || |||||||||||| |||||||||||||||| || ||||||| ||||||||||||||||    
T  38189683 caaatccatgaaatcatcaaggtttgcttcaacatcgtcctccaatgaaattggcttcttccctttttca 38189752  T

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Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 38216908 - 38216977
Alignment:
Q  21 caaatccatcaagtcatcaaggttttcttcaacatcgtcctctaacgaaattgccttcttccctttttca 90  Q
    ||||||||| || |||||||||||| |||||||||||||||| || ||||||| ||||||||||||||||    
T  38216908 caaatccatgaaatcatcaaggtttgcttcaacatcgtcctccaatgaaattggcttcttccctttttca 38216977  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 38456809 - 38456740
Alignment:
Q  21 caaatccatcaagtcatcaaggttttcttcaacatcgtcctctaacgaaattgccttcttccctttttca 90  Q
    ||||||||| || |||||||||||| |||||| ||||||||| || ||||||| ||||||||| ||||||    
T  38456809 caaatccatgaaatcatcaaggtttgcttcaaaatcgtcctccaatgaaattggcttcttcccattttca 38456740  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 275
Target Start/End: Complemental strand, 38156707 - 38156676
Alignment:
Q  244 aaatttcacttccataatagtgaccatttacc 275  Q
    ||||||||||||||||||||||||||||||||    
T  38156707 aaatttcacttccataatagtgaccatttacc 38156676  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 38208674 - 38208603
Alignment:
Q  21 caaatccatcaagtcatcaaggttttcttcaac-atcg-tcctctaacgaaattgccttcttccctttttca 90  Q
    ||||||||| || |||||||||||| ||||||| |||| ||||| || ||||||| ||||||||||||||||    
T  38208674 caaatccatgaaatcatcaaggtttgcttcaacgatcggtcctccaatgaaattggcttcttccctttttca 38208603  T

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Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 53350926 - 53351009
Alignment:
Q  7 tcaatcaaaagacacaaatccatcaagtcatcaaggttttcttcaacatcgtcctctaacgaaattgccttcttccctttttca 90  Q
    |||||||||||||||  |||||||||||||||||||||| |||||||||||||||  || ||||||| |||||| |||||||||    
T  53350926 tcaatcaaaagacacggatccatcaagtcatcaaggtttgcttcaacatcgtccttcaaagaaattggcttctttcctttttca 53351009  T

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