View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_low_31 (Length: 319)
Name: NF11530_low_31
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 54548162 - 54547876
Alignment:
| Q |
17 |
agaatttggtcggtgattgattgtgtgttttggtgggctgtgaaacctaaattagaaagatttgtgtaaatgtcagcttcaggaggtcctagattgaggt |
116 |
Q |
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| T |
54548162 |
agaatttggtcggtgattgattgtgtgttttggtgggctgtgaaacctaaattagaaagatttgtgtaaatgtcagcttcaggaggtcctagattgaggt |
54548063 |
T |
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| Q |
117 |
ctatgaatgttgctgactcagaagcaaggcctgtgtttggtcctgctggaaataagacaggttcttatagttctagaaaagatgcttcaaagccactgag |
216 |
Q |
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| T |
54548062 |
ctatgaatgttgctgactcagaagcaaggcctgtgtttggtcctgctggaaataagacaggttcttatagttctagaaaagatgcttcaaagccactgag |
54547963 |
T |
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| Q |
217 |
aaaggctgagaaattgggcaaggaggttgatttggccaaagagaagaaagaagcttctcctcagtcacattctgccagtgtttcttc |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54547962 |
aaaggctgagaaattgggcaaggaggttgatttggccaaagagaagaaagaagcttctcctcagtcacattctgccagtgtttcttc |
54547876 |
T |
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