View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_low_34 (Length: 292)
Name: NF11530_low_34
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 35871156 - 35870882
Alignment:
| Q |
1 |
cacataccagaacgccttcaatatgaagtattggttagaattcgaaaaggagaatctgctatttatattgtaaatttttaactcaaaattttaatgatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35871156 |
cacataccagaacgccttcaatatgaagtattggttagaattcgaaaaggagaatctgctatttatattgtaaatttttaactcaaaattttaatgatca |
35871057 |
T |
|
| Q |
101 |
ggtacttccatgtcaattttagaattgcttaatagaatagaaggattcttacctcatttatgttgccttgaaa-ttttactttattattaggaaaggctg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
35871056 |
ggtacttccatgtcaattttagaattgcttaatagaatagaaggattcttacctcatttatgttgccttgaaatttttactttattattaggaagggctg |
35870957 |
T |
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| Q |
200 |
cttctataaactcagttgtggaacataatgatgaatgaagggaaattgaatattaaggctcctcttatgtctgtg |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35870956 |
cttctataaactcagttgtggaacataatgatgaatgaagggaaattgaatattaatgctcctcttatgtctgtg |
35870882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 110 - 274
Target Start/End: Complemental strand, 35864916 - 35864742
Alignment:
| Q |
110 |
atgtcaattttagaattgcttaatagaatagaaggattcttacctcattt----------atgttgccttgaaattttactttattattaggaaaggctg |
199 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||| ||| | || || |||| |||||| | |||| |||||||| |||| |
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| T |
35864916 |
atgttaattttagaattgcttaatagaacagaaggattcttaccacatattttggccccaatatttccttaaaatttgagcttatcattaggaagggcta |
35864817 |
T |
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| Q |
200 |
cttctataaactcagttgtggaacataatgatgaatgaagggaaattgaatattaaggctcctcttatgtctgtg |
274 |
Q |
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||| || ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35864816 |
cttgtagaaattcagttgtggaacataatgatgaatgaagggaaattgaatattaatgctcctcttatgtctgtg |
35864742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 24445357 - 24445083
Alignment:
| Q |
1 |
cacataccagaacgccttcaatatgaagtattggttagaattcgaaaaggagaatctgctatttatattgtaaatttttaactcaaaattttaatgatca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24445357 |
cacataccagaacgccttcaatatgaagtattggttagaattcgaaaaggagaatctgctatttatattgtaaatttttaactcaaaattttaatgatca |
24445258 |
T |
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| Q |
101 |
ggtacttccatgtcaattttagaattgcttaatagaatagaaggattcttacctcatttatgttgccttgaaa-ttttactttattattaggaaaggctg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
24445257 |
ggtacttccatgtcaattttagaattgcttaatagaatagaaggattcttacctcatttatgttgccttgaaatttttactttattattaggaagggctg |
24445158 |
T |
|
| Q |
200 |
cttctataaactcagttgtggaacataatgatgaatgaagggaaattgaatattaaggctcctcttatgtctgtg |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
24445157 |
cttctataaactcagttgtggaacataatgatgaatgaagggaaattgaatattaatgctcctcttatgtctgtg |
24445083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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