View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_low_35 (Length: 289)
Name: NF11530_low_35
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 21 - 258
Target Start/End: Original strand, 42192485 - 42192722
Alignment:
| Q |
21 |
tgtgcgacttgcataaactcgacgagaataatatttgccatttnnnnnnnngatacactttattgtcaaaatccctcttttaagggtcaaccatgatatt |
120 |
Q |
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| T |
42192485 |
tgtgcgacttgcataaactcgacgagaataatatttgccatttaaaaaaaagatacactttattgtcaaaatccctcttttaagggtcaaccatgatatt |
42192584 |
T |
|
| Q |
121 |
acgaataacctttaatagcattcttatttttctccttgtacaattattaagaataactgatatatgtaattttgtattgccaattgtaatacacacaata |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42192585 |
acgaataacctttaatagcattcttatttttctccttgtacaattattaagaataaccgatatatgtaattttgtatcgccaattgtaatacacacaata |
42192684 |
T |
|
| Q |
221 |
attgaaattctattattcctttttgtcatggtgttaga |
258 |
Q |
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||||||||||||||||||||||||| |||||||||||| |
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| T |
42192685 |
attgaaattctattattcctttttgacatggtgttaga |
42192722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 75 - 245
Target Start/End: Original strand, 45981857 - 45982013
Alignment:
| Q |
75 |
acactttattgtcaaaatccctcttttaagggtcaaccatgatattacgaataacctttaatagcattcttatttttctccttgtacaattattaagaat |
174 |
Q |
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|||||||||||| |||||||||| ||||||||||||| |||||||| ||||| | |||||||||||||||||||||||||||||| | || |
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| T |
45981857 |
acactttattgtaaaaatccctcctttaagggtcaactgtgatattaagaatagcttttaatagcattcttatttttctccttgtatagtt--------- |
45981947 |
T |
|
| Q |
175 |
aactgatatatgtaattttgtattgccaattgtaatacacacaataattgaaattctattattcctttttg |
245 |
Q |
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| T |
45981948 |
-----atatatgtaattctgtatcagtaattgtaatacacacaataattgaaattctattcttcctttttg |
45982013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 75 - 252
Target Start/End: Complemental strand, 527235 - 527072
Alignment:
| Q |
75 |
acactttattgtcaaaatccctcttttaagggtcaaccatgatattacgaataacctttaatagcattcttatttttctccttgtacaattattaagaat |
174 |
Q |
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|||||||||||| |||||||||| ||||||||||||| |||||||| ||||| | |||||||||||||||||||||||||||||| | || |
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| T |
527235 |
acactttattgtaaaaatccctcctttaagggtcaactgtgatattaagaatagcttttaatagcattcttatttttctccttgtatagtt--------- |
527145 |
T |
|
| Q |
175 |
aactgatatatgtaattttgtattgccaattgtaatacacacaataattgaaattctattattcctttttgtcatggt |
252 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
527144 |
-----atatatgtaattctgtatcagtaattgtaatacacacaataattgaaattctattcttcctttttgacatggt |
527072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 75 - 245
Target Start/End: Complemental strand, 522470 - 522314
Alignment:
| Q |
75 |
acactttattgtcaaaatccctcttttaagggtcaaccatgatattacgaataacctttaatagcattcttatttttctccttgtacaattattaagaat |
174 |
Q |
| |
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|||||||||||| |||||||||| ||||||||||||| |||||||| ||||| | |||||||||||||||||||||||||||||| | || |
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| T |
522470 |
acactttattgtaaaaatccctcctttaagggtcaactgtgatattaagaatagcttttaatagcattcttatttttctccttgtatagtt--------- |
522380 |
T |
|
| Q |
175 |
aactgatatatgtaattttgtattgccaattgtaatacacacaataattgaaattctattattcctttttg |
245 |
Q |
| |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
522379 |
-----atatatgtaattctgtatcagtaattgtaatacacacaataattgaaattctattcttcctttttg |
522314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 4222374 - 4222336
Alignment:
| Q |
21 |
tgtgcgacttgcataaactcgacgagaataatatttgcc |
59 |
Q |
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|||||| ||||||||| |||||||||||||||||||||| |
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| T |
4222374 |
tgtgcgtcttgcataatctcgacgagaataatatttgcc |
4222336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 6902000 - 6902042
Alignment:
| Q |
21 |
tgtgcgacttgcataaactcgacgagaataatatttgccattt |
63 |
Q |
| |
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|||||| |||||||| |||||||||||||||| |||||||||| |
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| T |
6902000 |
tgtgcgtcttgcatatactcgacgagaataatgtttgccattt |
6902042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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