View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11530_low_41 (Length: 257)

Name: NF11530_low_41
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11530_low_41
NF11530_low_41
[»] chr4 (22 HSPs)
chr4 (129-235)||(26435800-26435906)
chr4 (129-235)||(26832731-26832837)
chr4 (2-99)||(26433893-26433990)
chr4 (2-99)||(26435673-26435770)
chr4 (129-235)||(26434020-26434126)
chr4 (2-99)||(26832604-26832701)
chr4 (129-235)||(34662217-34662323)
chr4 (134-235)||(23408716-23408817)
chr4 (131-235)||(24307221-24307325)
chr4 (131-235)||(23415885-23415989)
chr4 (131-235)||(23885825-23885929)
chr4 (1-99)||(23868600-23868698)
chr4 (134-235)||(23402075-23402176)
chr4 (134-235)||(23453548-23453649)
chr4 (131-235)||(23868730-23868834)
chr4 (5-99)||(23885699-23885793)
chr4 (2-94)||(34662358-34662450)
chr4 (5-90)||(23401946-23402031)
chr4 (5-90)||(23408861-23408946)
chr4 (1-90)||(24307091-24307180)
chr4 (5-99)||(23416018-23416112)
chr4 (5-87)||(23453696-23453778)
[»] chr1 (3 HSPs)
chr1 (129-235)||(41670396-41670502)
chr1 (129-234)||(40795765-40795870)
chr1 (129-235)||(29391462-29391568)
[»] chr7 (1 HSPs)
chr7 (129-228)||(40180453-40180552)


Alignment Details
Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 129 - 235
Target Start/End: Original strand, 26435800 - 26435906
Alignment:
Q  129 gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat 228  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26435800 gcgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcat 26435899  T
Q  229 caatgat 235  Q
    |||||||    
T  26435900 caatgat 26435906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 129 - 235
Target Start/End: Original strand, 26832731 - 26832837
Alignment:
Q  129 gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat 228  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26832731 gcgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcat 26832830  T
Q  229 caatgat 235  Q
    |||||||    
T  26832831 caatgat 26832837  T

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Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 26433893 - 26433990
Alignment:
Q  2 gcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26433893 gcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg 26433990  T

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Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 26435673 - 26435770
Alignment:
Q  2 gcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26435673 gcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg 26435770  T

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Target: chr4; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 129 - 235
Target Start/End: Original strand, 26434020 - 26434126
Alignment:
Q  129 gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat 228  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26434020 gcgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcatccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcat 26434119  T
Q  229 caatgat 235  Q
    |||||||    
T  26434120 caatgat 26434126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 26832604 - 26832701
Alignment:
Q  2 gcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26832604 gcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccaaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg 26832701  T

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Target: chr4; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 129 - 235
Target Start/End: Complemental strand, 34662323 - 34662217
Alignment:
Q  129 gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat 228  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||    
T  34662323 gcgttgaaacctacaagatctacatcttcaaggttctgaaacaagttcaccctgacattggtatctcaagcaaagccatgggtattatgaacagtttcat 34662224  T
Q  229 caatgat 235  Q
    |||||||    
T  34662223 caatgat 34662217  T

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Target: chr4; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 23408817 - 23408716
Alignment:
Q  134 gaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 233  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23408817 gaaacatacaagatctacatcttcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagcgatgggtatcatgaacagtttcatcaatg 23408718  T
Q  234 at 235  Q
    ||    
T  23408717 at 23408716  T

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Target: chr4; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 131 - 235
Target Start/End: Original strand, 24307221 - 24307325
Alignment:
Q  131 gttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcatca 230  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||    
T  24307221 gttgaaacatacaagatctatatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatca 24307320  T
Q  231 atgat 235  Q
    |||||    
T  24307321 atgat 24307325  T

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Target: chr4; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 131 - 235
Target Start/End: Complemental strand, 23415989 - 23415885
Alignment:
Q  131 gttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcatca 230  Q
    ||||||||||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  23415989 gttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatca 23415890  T
Q  231 atgat 235  Q
    |||||    
T  23415889 atgat 23415885  T

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Target: chr4; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 131 - 235
Target Start/End: Original strand, 23885825 - 23885929
Alignment:
Q  131 gttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcatca 230  Q
    ||||||||||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  23885825 gttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatca 23885924  T
Q  231 atgat 235  Q
    |||||    
T  23885925 atgat 23885929  T

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Target: chr4; HSP #12
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 23868600 - 23868698
Alignment:
Q  1 cgcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg 99  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  23868600 cgcagaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagcttccaaaggaaggtggttcagccgccgg 23868698  T

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Target: chr4; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 23402075 - 23402176
Alignment:
Q  134 gaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 233  Q
    |||||||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23402075 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg 23402174  T
Q  234 at 235  Q
    ||    
T  23402175 at 23402176  T

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Target: chr4; HSP #14
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 23453649 - 23453548
Alignment:
Q  134 gaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 233  Q
    |||||||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23453649 gaaacatacaagatctacatcttcaaagttctgaatcatgttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg 23453550  T
Q  234 at 235  Q
    ||    
T  23453549 at 23453548  T

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Target: chr4; HSP #15
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 131 - 235
Target Start/End: Original strand, 23868730 - 23868834
Alignment:
Q  131 gttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcatca 230  Q
    ||||||||||||||||||||||||||||| || ||||| || ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||    
T  23868730 gttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatca 23868829  T
Q  231 atgat 235  Q
    |||||    
T  23868830 atgat 23868834  T

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Target: chr4; HSP #16
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 23885699 - 23885793
Alignment:
Q  5 gaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg 99  Q
    ||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  23885699 gaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagcttccaaaggaaggtggttcagccgccgg 23885793  T

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Target: chr4; HSP #17
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 34662450 - 34662358
Alignment:
Q  2 gcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagcc 94  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | |||||||||    
T  34662450 gcagaggagaagaaatccaccgtcgccgagaaagctccggcagagaagaagccaaaggccggaaagaagcttccaaaggaaagcggttcagcc 34662358  T

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Target: chr4; HSP #18
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 23401946 - 23402031
Alignment:
Q  5 gaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttc 90  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  23401946 gaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttc 23402031  T

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Target: chr4; HSP #19
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 23408946 - 23408861
Alignment:
Q  5 gaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttc 90  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  23408946 gaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagcccaaggcaggaaagaagctaccaaaggaaggtggttc 23408861  T

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Target: chr4; HSP #20
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 24307091 - 24307180
Alignment:
Q  1 cgcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttc 90  Q
    ||||||||||||||||||||||||||| ||||| ||||| || ||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  24307091 cgcagaggagaagaagtccaccgtcgccgagaaggctcctgctgagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttc 24307180  T

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Target: chr4; HSP #21
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 23416112 - 23416018
Alignment:
Q  5 gaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg 99  Q
    |||||||||||||||||||| || ||||||||||| || ||||||||||| ||||| || |||||||| |||||||||||||||||||| |||||    
T  23416112 gaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggcagggaagaagctaccaaaggaaggtggttcagctgccgg 23416018  T

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Target: chr4; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 23453778 - 23453696
Alignment:
Q  5 gaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtgg 87  Q
    |||||||||||||||||||| || ||||||||||| || ||||||||||| ||||| |||||||||||||| |||||||||||    
T  23453778 gaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggctggaaagaagcttcctaaggaaggtgg 23453696  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 235
Target Start/End: Original strand, 41670396 - 41670502
Alignment:
Q  129 gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat 228  Q
    |||||||||| ||||||||||||||||||||||| || || || ||||| || || ||||||||||||||||| || ||||| ||||||||||| |||||    
T  41670396 gcgttgaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcat 41670495  T
Q  229 caatgat 235  Q
    |||||||    
T  41670496 caatgat 41670502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 234
Target Start/End: Original strand, 40795765 - 40795870
Alignment:
Q  129 gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat 228  Q
    |||| ||||| ||||||||||||||||||||||| || || || ||||| || || ||||| ||||| ||||| || ||||| |||||||||||||||||    
T  40795765 gcgtagaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggaatctccagcaaggctatggggatcatgaacagtttcat 40795864  T
Q  229 caatga 234  Q
    ||||||    
T  40795865 caatga 40795870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 235
Target Start/End: Original strand, 29391462 - 29391568
Alignment:
Q  129 gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat 228  Q
    |||||||||| || ||||| |||||||||||||| || ||||| ||||| || ||||| ||||| ||   |||||| ||||| || ||||||||||||||    
T  29391462 gcgttgaaacctataagatttacatcttcaaggttctcaaacaggttcatcctgatataggtatttcttccaaagctatggggattatgaacagtttcat 29391561  T
Q  229 caatgat 235  Q
    |||||||    
T  29391562 caatgat 29391568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 40180552 - 40180453
Alignment:
Q  129 gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat 228  Q
    |||||||||| |||||||| |||||||||||||| |||||||| ||||| || ||||| ||| | |||||||| || ||||| |||||||||||||||||    
T  40180552 gcgttgaaacctacaagatatacatcttcaaggttctgaaacaggttcatcctgatatcggtgtttcaagcaaggctatgggaatcatgaacagtttcat 40180453  T

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