View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_low_46 (Length: 246)
Name: NF11530_low_46
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_low_46 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 2486457 - 2486217
Alignment:
| Q |
18 |
cttcatccacccacaacttcactgcttccgcgccacttacgtagccggtgctcacggcaatattctcgcca------------taacggccaccactgcc |
105 |
Q |
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| T |
2486457 |
cttcatccacccacaacttcactgcttccgcgccacttatgtagccggtgctcaccgcaatattctcgccaagatactcaccataacggccaccactgcc |
2486358 |
T |
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| Q |
106 |
tgaggggatctgtttacaatccttgcgttgattagcatagttctgcgcaaatgcagcaatatcgttatcccaaacaatgtttggaattttaatggtggta |
205 |
Q |
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| T |
2486357 |
tgaggggatctgtttacaatccttgcgttgattagcatagttctgtgcaaatgcagcaatatcgttatcccaaacaatgtttggaattttaatggtggta |
2486258 |
T |
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| Q |
206 |
atggctgatcttgctttgttgtgggcgttcacgtagtctgc |
246 |
Q |
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| T |
2486257 |
atggctgatcttgctttgttgtgggcgttcacgtagtctgc |
2486217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 58 - 246
Target Start/End: Complemental strand, 2470899 - 2470711
Alignment:
| Q |
58 |
gtagccggtgctcacggcaatattctcgccataacggccaccactgcctgaggggatctgtttacaatccttgcgttgattagcatagttctgcgcaaat |
157 |
Q |
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| T |
2470899 |
gtagccggtgctcaccgcaatattctcgccataacggccaccactgcctgaagggatctgtttacaatccttgcgtttattagcatagttctgtgcaaaa |
2470800 |
T |
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| Q |
158 |
gcagcaatatcgttatcccaaacaatgtttggaattttaatggtggtaatggctgatcttgctttgttgtgggcgttcacgtagtctgc |
246 |
Q |
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| T |
2470799 |
gcagcaactttttcatcccaaacaatatttggaattttagcactggtaatcacaaatcttgctgcattgtgggcgttcacatagtctgc |
2470711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 2483278 - 2483099
Alignment:
| Q |
19 |
ttcatccacccacaacttcactgcttccgcgccacttacgtagccggtgctcacggcaatattctcgccataacggccaccactgcctgaggggatctgt |
118 |
Q |
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| T |
2483278 |
ttcatccgcccacaacttcactgcttttcttccactgatgtgtccggtgctcaccgcaatattctcaccgtaacggccaccactatcagaggggatcggt |
2483179 |
T |
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| Q |
119 |
ttacaatccttgcgttgattagcatagttctgcgcaaatgcagcaatatcgttatcccaaacaatgtttggaattttaat |
198 |
Q |
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| T |
2483178 |
ttacaatccttgcgttgattagcatagttctgtgcataagcagcaatttttttatcccaaacaatttttggaattttaat |
2483099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 34 - 199
Target Start/End: Complemental strand, 2478759 - 2478594
Alignment:
| Q |
34 |
cttcactgcttccgcgccacttacgtagccggtgctcacggcaatattctcgccataacggccaccactgcctgaggggatctgtttacaatccttgcgt |
133 |
Q |
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| T |
2478759 |
cttcactgcttgtgtgccacttatgtagccagtgctcaccgcaatattcttgccataacgaccaccaccattggagggtatcggtttacaatccttgcgt |
2478660 |
T |
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| Q |
134 |
tgattagcatagttctgcgcaaatgcagcaatatcgttatcccaaacaatgtttggaattttaatg |
199 |
Q |
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| T |
2478659 |
tgattagcatagttctgtgcataagcagcaacttcgttgtcccaaacaatgtttggaattttaatg |
2478594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 2469911 - 2469681
Alignment:
| Q |
19 |
ttcatccacccacaacttcactgcttccgcgccacttacgtagccggtgctcacggcaatattctcgccataacggccaccactgcctgaggggatctgt |
118 |
Q |
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| T |
2469911 |
ttcatccacccacaacttcaccgcttctacgccactcatgttgccagtgctctccgcgatattctctccgtaacggccaccaccaccagagtggaccagt |
2469812 |
T |
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| Q |
119 |
ttacaatccttgcgttgattagcatagttctgcgcaaatgcagcaatatcgttatcccaaacaatgtttggaattttaatggtggt---aatggctgatc |
215 |
Q |
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| T |
2469811 |
tgacaatccttgcgttgattagcatagttttttgcaaaagcagcaactttgttgtcccaaacaatatttggaattttaacgtttgtatgaaccgctgatc |
2469712 |
T |
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| Q |
216 |
ttgctttgttgtgggcgttcacgtagtctgc |
246 |
Q |
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| T |
2469711 |
ttgcattattgtgggcgttcacgtagtctgc |
2469681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 246
Target Start/End: Complemental strand, 2474086 - 2473958
Alignment:
| Q |
121 |
acaatccttgcgttgattagcatagttctgcgcaaatgcagcaatatcgttatcccaaacaatgtttggaattttaatggtggt---aatggctgatctt |
217 |
Q |
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| T |
2474086 |
acaatccttgcgttgattagcataattttgtgcataagcagcaactttgttgtcccaaataatgtttggaattttaatatttgtatcaactgccgatctt |
2473987 |
T |
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| Q |
218 |
gctttgttgtgggcgttcacgtagtctgc |
246 |
Q |
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| T |
2473986 |
gcttggttgtgggcattcacgtagtctgc |
2473958 |
T |
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