View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_low_5 (Length: 517)
Name: NF11530_low_5
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 40839144 - 40838714
Alignment:
| Q |
1 |
tataaggagtctcccacaactccgtttttggttgatagtgaagaagcaggaattctgaaaagccatggaccattggctttccgcaaggtagtttaaggat |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40839144 |
tataaggagtctcctacaactccgtttttggttgatagtgaagaagcaggaattctgaaaagccatggaccattggctttccgcaaggtagtttaaggat |
40839045 |
T |
|
| Q |
101 |
gtattcatgagcataagcggctattcgtctacaatgtacagacacttcaaattaaaagtttgtctggtgttcgacatatgtcgtgtcccacaccgacaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40839044 |
gtattcatgagcataagcggctattcgtctacaatgtacagacacttcaaattaaaagtttgtctggtgttcgacatatgtcgtgtcccacaccgataga |
40838945 |
T |
|
| Q |
201 |
agtatttacatctgatcacttttatttcgcagatgtctacatgtcaacattggtgttgtgtctattgtatgtgtgtgtctgttggtgctttgtagctatt |
300 |
Q |
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| T |
40838944 |
agtatttacatctgatc-cttttatttcgcagatgtctacatgtcaacattggtgttgtgtctattgtatgtgtgtgtctgttggtgctttgtagctatt |
40838846 |
T |
|
| Q |
301 |
gattcacttgaa--tttaattattttatgctttttggaacaataggtgaaagaggctggtcacatggttcctatggatcaaccaaaagctgcacttcaga |
398 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40838845 |
gattcacttgtatttttaattattttatgctttttggaacaatagttgaaagaggctggtcacatggttcctatggatcaaccaaaagttgcacttcaga |
40838746 |
T |
|
| Q |
399 |
tgttaaaagattggatgcaagggaaactgata |
430 |
Q |
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| T |
40838745 |
tgttacaagaatggatgcaagggaaactgata |
40838714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 336 - 500
Target Start/End: Complemental strand, 40849379 - 40849215
Alignment:
| Q |
336 |
aacaataggtgaaagaggctggtcacatggttcctatggatcaaccaaaagctgcacttcagatgttaaaagattggatgcaagggaaactgataaggac |
435 |
Q |
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| T |
40849379 |
aacaataggtgaaagaggctggtcacatggttcctatggatcaaccaaaagctgcacttcagatgttaaaagattggatgcaagggaaactgataaggac |
40849280 |
T |
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| Q |
436 |
aaagggaggagataatgtctcgtctatataatgcactcatcttaaaacaaaaatcagattcttat |
500 |
Q |
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| T |
40849279 |
aaagggaggagataatgtctcgtctatataatgcactcatcttaaaacaaaaatcacattcttat |
40849215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 257 - 427
Target Start/End: Complemental strand, 40843601 - 40843431
Alignment:
| Q |
257 |
tgtgtctattgtatgtgtgtgtctgttggtgctttgtagctattgattcacttgaatttaattattttatgctttttggaacaataggtgaaagaggctg |
356 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||| ||| |||| |||||| ||| | | |||||||||||||||||||||||||||| |
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| T |
40843601 |
tgtgtctggtgtatgtgtgtgtctgttggtgttttgtagctattggttcgcttgtatttaactatatatttttttttggaacaataggtgaaagaggctg |
40843502 |
T |
|
| Q |
357 |
gtcacatggttcctatggatcaaccaaaagctgcacttcagatgttaaaagattggatgcaagggaaactg |
427 |
Q |
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| T |
40843501 |
gtcacatggttcctatggatcaaccaaaagttgcacttcagatgttacaagattggatgcaagggaaactg |
40843431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 3 - 170
Target Start/End: Complemental strand, 40843760 - 40843590
Alignment:
| Q |
3 |
taaggagtctcccacaactccgtttttggttgatagtgaagaagcaggaattctgaaaagccatggaccattggctttccgcaaggt---agtttaagga |
99 |
Q |
| |
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|||||||||||| |||||| | |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| |
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| T |
40843760 |
taaggagtctcctacaacttcatttttggtggatagtgaagaagcaggaattctgaaaagccatggacctttggctttccttaaggtttgtgtttaagga |
40843661 |
T |
|
| Q |
100 |
tgtattcatgagcataagcggctattcgtctacaatgtacagacacttcaaattaaaagtttgtctggtgt |
170 |
Q |
| |
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|||||||||||||||||| | ||||| |||||| |||||||||||||||||||||||| |||||||||| |
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| T |
40843660 |
tgtattcatgagcataagagtctattgatctacatagtacagacacttcaaattaaaagtgtgtctggtgt |
40843590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 40849676 - 40849614
Alignment:
| Q |
27 |
tttggttgatagtgaagaagcaggaattctgaaaagccatggaccattggctttccgcaaggt |
89 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| ||||| | ||||||| |||||| |
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| T |
40849676 |
tttggttgatagtgaagaagcaggagatctgaaaagccacggacctcttgctttcctcaaggt |
40849614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 402
Target Start/End: Original strand, 21146898 - 21146938
Alignment:
| Q |
362 |
atggttcctatggatcaaccaaaagctgcacttcagatgtt |
402 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21146898 |
atggtccctatggatcaaccaaaagctgcacttcagatgtt |
21146938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 402
Target Start/End: Original strand, 21151475 - 21151539
Alignment:
| Q |
338 |
caataggtgaaagaggctggtcacatggttcctatggatcaaccaaaagctgcacttcagatgtt |
402 |
Q |
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||||||||||| || ||||| || ||||| |||||||||||||||||||||||| | |||||||| |
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| T |
21151475 |
caataggtgaatgatgctggacatatggtccctatggatcaaccaaaagctgcattacagatgtt |
21151539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 402
Target Start/End: Original strand, 21126805 - 21126844
Alignment:
| Q |
363 |
tggttcctatggatcaaccaaaagctgcacttcagatgtt |
402 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
21126805 |
tggtccctatggatcaaccaaaagctgcacttcagatgtt |
21126844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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