View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_low_52 (Length: 201)
Name: NF11530_low_52
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_low_52 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 9e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 15296416 - 15296246
Alignment:
| Q |
14 |
catagggaaccgaaaattgcgtgtttggaaaataaaacagcaaattgaatatgaaactaaaatggcatgttggataaacaaaattgatgattgaattgaa |
113 |
Q |
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| T |
15296416 |
catagggaaccgaaa-ttgcatgttgggaaaataaaacagcaaattgaatatgaaactgaaatggcatgttggaaaaacaaaattgatgattgaattgaa |
15296318 |
T |
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| Q |
114 |
cgtaataaatgctaaagaaagaaaagtggatcggcagacttgatttttcaa-gtgaaatactgattaggaaa |
184 |
Q |
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| T |
15296317 |
cgcaataaatgctaaagaaagaaaagtggatcggcagacttgatttttcaaggtgaaatgctgattaggaaa |
15296246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 1e-61; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 37337594 - 37337424
Alignment:
| Q |
14 |
catagggaaccgaaaattgcgtgtttggaaaataaaacagcaaattgaatatgaaactaaaatggcatgttggataaacaaaattgatgattgaattgaa |
113 |
Q |
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| T |
37337594 |
catagggaactgaaa-ttgcatgttgggaaaataaaacagcaaattgaatatgaaactgaaatggcatgttggaaaaacaaaattgattattgaattgaa |
37337496 |
T |
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| Q |
114 |
cgtaataaatgctaaagaaagaaaagtggatcggcagacttgatttttcaa-gtgaaatactgattaggaaa |
184 |
Q |
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| T |
37337495 |
cgtaataaatgctaaagaaagaaaagtggatcggcagagttgatttctcaaggtgaaatgctgattaggaaa |
37337424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 11300583 - 11300670
Alignment:
| Q |
14 |
catagggaaccgaaaattgcgtgtttggaaaataaaacagcaaattgaatatgaaactaaaatggcatgttggataaacaaaattgatg |
102 |
Q |
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| T |
11300583 |
catagggaaccgaaa-ttgcatgttgggaaaataaaacagcaaattgaatatgaaactgaaatggcatgttggaaaaacaaaattgatg |
11300670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 11300673 - 11300733
Alignment:
| Q |
127 |
aaagaaagaaaagtggatcggcagact--tgatttttcaa-gtgaaatactgattaggaaa |
184 |
Q |
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| T |
11300673 |
aaagaaaaaaaagtggatcggcagacttgtgatttttcaaggtgaaatgctgattaggaaa |
11300733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 44508852 - 44508745
Alignment:
| Q |
42 |
aaaataaaacagcaaattgaatatgaaactaaaatggcatgttggataaacaaaattgatgattgaattgaacgtaataaatgctaaagaaagaaaagtg |
141 |
Q |
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|||||||||| ||||||| ||||||| ||| || || ||||||||| |||||||||||||||||||| ||| ||||||||||| ||||| || || || |
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| T |
44508852 |
aaaataaaactgcaaattaaatatgacactgaattgacatgttggaaaaacaaaattgatgattgaaatgattgtaataaatgccaaagagaggaacatg |
44508753 |
T |
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| Q |
142 |
gatcggca |
149 |
Q |
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|||||||| |
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| T |
44508752 |
gatcggca |
44508745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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