View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11530_low_6 (Length: 502)

Name: NF11530_low_6
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11530_low_6
NF11530_low_6
[»] chr1 (5 HSPs)
chr1 (184-484)||(46003181-46003501)
chr1 (55-100)||(15061963-15062008)
chr1 (11-46)||(46003658-46003693)
chr1 (53-99)||(46003584-46003630)
chr1 (55-99)||(7503584-7503628)
[»] chr8 (4 HSPs)
chr8 (55-99)||(42543389-42543433)
chr8 (55-100)||(34474069-34474113)
chr8 (55-99)||(37101594-37101638)
chr8 (55-99)||(45101515-45101558)
[»] chr4 (6 HSPs)
chr4 (55-99)||(31240767-31240811)
chr4 (55-99)||(41952947-41952991)
chr4 (55-99)||(36792451-36792495)
chr4 (55-94)||(52392133-52392172)
chr4 (66-99)||(6953307-6953340)
chr4 (55-99)||(1580191-1580235)
[»] chr5 (5 HSPs)
chr5 (60-99)||(12661860-12661899)
chr5 (66-99)||(10232618-10232651)
chr5 (60-99)||(13613877-13613916)
chr5 (60-98)||(16202840-16202878)
chr5 (62-99)||(21749477-21749514)
[»] chr7 (4 HSPs)
chr7 (55-100)||(40717147-40717192)
chr7 (64-100)||(4182524-4182560)
chr7 (55-99)||(19426699-19426742)
chr7 (55-99)||(22330540-22330583)
[»] chr3 (5 HSPs)
chr3 (55-96)||(51650478-51650519)
chr3 (55-99)||(6126573-6126617)
chr3 (184-223)||(50146482-50146521)
chr3 (66-99)||(32687879-32687912)
chr3 (55-99)||(31249230-31249274)
[»] chr2 (5 HSPs)
chr2 (66-99)||(12066028-12066061)
chr2 (184-220)||(12358311-12358347)
chr2 (55-99)||(19913903-19913947)
chr2 (60-100)||(30996830-30996870)
chr2 (55-99)||(45515508-45515551)
[»] chr6 (1 HSPs)
chr6 (66-99)||(9954667-9954700)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 184 - 484
Target Start/End: Complemental strand, 46003501 - 46003181
Alignment:
Q  184 ttgtcacaaaatgaatatacatatatcatttctctatatattttcatattaactaggactaagaggatgtat--------------------aaagtctt 263  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||                    ||||||||    
T  46003501 ttgtcacaaaatggatatacatatatcatttctctatatattttcatattaactaggactaaaaggatgtatgcattcatttatttatagataaagtctt 46003402  T
Q  264 acatgctcacaaccatgtatttttaagataactaaatgaaatatgtatgaaaaatggtgtatttaaattactgtgacatacaagtattttccttccttgt 363  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46003401 acatgctcacaaccatgtatttttaagataactaaatgatatatgtatgaaaaatggtgtatttaaattattgtgacatacaagtattttccttccttgt 46003302  T
Q  364 attattttttctattataagttctttatatgtaatatcttttgttctttgtttgagatttacattttgaaatgacgagtgaagccaaaaaagacaaaggg 463  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46003301 attattttttctattctaagttctttatatgtaatatcttttgttctttgtttgagatttacattttgaaatgacgagtgaagccaaaaaagacaaaggg 46003202  T
Q  464 tatctagctacatacataatg 484  Q
    |||||||||||||||||||||    
T  46003201 tatctagctacatacataatg 46003181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 15062008 - 15061963
Alignment:
Q  55 ccatctcatataacttttggtgacaacttcttttttctctcttttt 100  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||    
T  15062008 ccatttcatataacttttggtgacaactttttttttctctcttttt 15061963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 46003693 - 46003658
Alignment:
Q  11 cacagatagagagagaacaatgcttcaaattttgaa 46  Q
    ||||||||||||||||||||||||||||||||||||    
T  46003693 cacagatagagagagaacaatgcttcaaattttgaa 46003658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 46003630 - 46003584
Alignment:
Q  53 ctccatctcatataacttttggtgacaacttcttttttctctctttt 99  Q
    |||||| |||||||| ||||| |||||||||||||| ||||||||||    
T  46003630 ctccatgtcatataatttttgatgacaacttcttttctctctctttt 46003584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 7503628 - 7503584
Alignment:
Q  55 ccatctcatataacttttggtgacaacttcttttttctctctttt 99  Q
    |||| ||||| ||||||||||||||| || |||||||||||||||    
T  7503628 ccatttcatacaacttttggtgacaattttttttttctctctttt 7503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 42543389 - 42543433
Alignment:
Q  55 ccatctcatataacttttggtgacaacttcttttttctctctttt 99  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||    
T  42543389 ccatttcatacaacttttggtgacaacttcttttttctctctttt 42543433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 34474113 - 34474069
Alignment:
Q  55 ccatctcatataacttttggtgacaacttcttttttctctcttttt 100  Q
    |||| ||||| |||||||||||||||||||| ||||||||||||||    
T  34474113 ccatttcatacaacttttggtgacaacttct-ttttctctcttttt 34474069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 37101594 - 37101638
Alignment:
Q  55 ccatctcatataacttttggtgacaacttcttttttctctctttt 99  Q
    |||| ||||| || |||| ||||||||||||||||||||||||||    
T  37101594 ccatttcatacaatttttcgtgacaacttcttttttctctctttt 37101638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 45101558 - 45101515
Alignment:
Q  55 ccatctcatataacttttggtgacaacttcttttttctctctttt 99  Q
    |||| ||||| |||||||||||||||||| |||||||||||||||    
T  45101558 ccatttcatacaacttttggtgacaactt-ttttttctctctttt 45101515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 31240811 - 31240767
Alignment:
Q  55 ccatctcatataacttttggtgacaacttcttttttctctctttt 99  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||    
T  31240811 ccatttcatacaacttttggtgacaacttcttttttctctctttt 31240767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 41952991 - 41952947
Alignment:
Q  55 ccatctcatataacttttggtgacaacttcttttttctctctttt 99  Q
    |||| |||||||||||||||||||||||| |||||||||||||||    
T  41952991 ccatttcatataacttttggtgacaactttttttttctctctttt 41952947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 36792495 - 36792451
Alignment:
Q  55 ccatctcatataacttttggtgacaacttcttttttctctctttt 99  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||||    
T  36792495 ccatttcatacaacttttggtgacaacttcttttctctctctttt 36792451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 52392133 - 52392172
Alignment:
Q  55 ccatctcatataacttttggtgacaacttcttttttctct 94  Q
    |||| ||||| |||||||||||||||||||||||||||||    
T  52392133 ccatttcatacaacttttggtgacaacttcttttttctct 52392172  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 6953307 - 6953340
Alignment:
Q  66 aacttttggtgacaacttcttttttctctctttt 99  Q
    ||||||||||||||||||||||| ||||||||||    
T  6953307 aacttttggtgacaacttcttttctctctctttt 6953340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 1580191 - 1580235
Alignment:
Q  55 ccatctcatataacttttggtgacaacttcttttttctctctttt 99  Q
    |||| ||||| ||||||| |||||||||| |||||||||||||||    
T  1580191 ccatttcatacaactttttgtgacaactttttttttctctctttt 1580235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 12661860 - 12661899
Alignment:
Q  60 tcatataacttttggtgacaacttcttttttctctctttt 99  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  12661860 tcatacaacttttggtgacaacttcttttttctctctttt 12661899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 10232651 - 10232618
Alignment:
Q  66 aacttttggtgacaacttcttttttctctctttt 99  Q
    ||||||||||||||||||||||||||||||||||    
T  10232651 aacttttggtgacaacttcttttttctctctttt 10232618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 13613877 - 13613916
Alignment:
Q  60 tcatataacttttggtgacaacttcttttttctctctttt 99  Q
    ||||| ||||||||||||||| ||||||||||||||||||    
T  13613877 tcatacaacttttggtgacaatttcttttttctctctttt 13613916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 16202878 - 16202840
Alignment:
Q  60 tcatataacttttggtgacaacttcttttttctctcttt 98  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  16202878 tcatacaacttttagtgacaacttcttttttctctcttt 16202840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 21749514 - 21749477
Alignment:
Q  62 atataacttttggtgacaacttcttttttctctctttt 99  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  21749514 atataatttttggtgacaatttcttttttctctctttt 21749477  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 40717147 - 40717192
Alignment:
Q  55 ccatctcatataacttttggtgacaacttcttttttctctcttttt 100  Q
    |||| ||||| ||||||| |||||||||||||||||||||||||||    
T  40717147 ccatttcatacaactttttgtgacaacttcttttttctctcttttt 40717192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 4182560 - 4182524
Alignment:
Q  64 ataacttttggtgacaacttcttttttctctcttttt 100  Q
    |||||||||||||||||||| |||| |||||||||||    
T  4182560 ataacttttggtgacaacttattttctctctcttttt 4182524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 19426742 - 19426699
Alignment:
Q  55 ccatctcatataacttttggtgacaacttcttttttctctctttt 99  Q
    |||| ||||| |||||||||||||||||| |||||||||||||||    
T  19426742 ccatttcatacaacttttggtgacaactt-ttttttctctctttt 19426699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 22330540 - 22330583
Alignment:
Q  55 ccatctcatataacttttggtgacaacttcttttttctctctttt 99  Q
    |||| |||||||| ||||||||||||||| |||||||||||||||    
T  22330540 ccatttcatataatttttggtgacaactt-ttttttctctctttt 22330583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 51650519 - 51650478
Alignment:
Q  55 ccatctcatataacttttggtgacaacttcttttttctctct 96  Q
    |||| ||||| |||||||||||||||||||||||||||||||    
T  51650519 ccatttcatacaacttttggtgacaacttcttttttctctct 51650478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 6126617 - 6126573
Alignment:
Q  55 ccatctcatataacttttggtgacaacttcttttttctctctttt 99  Q
    |||| ||||| |||||||||| |||||||||||||||||||||||    
T  6126617 ccatttcatacaacttttggttacaacttcttttttctctctttt 6126573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 50146521 - 50146482
Alignment:
Q  184 ttgtcacaaaatgaatatacatatatcatttctctatata 223  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  50146521 ttgtcacaaaatgattatacaaatatcatttctctatata 50146482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 32687879 - 32687912
Alignment:
Q  66 aacttttggtgacaacttcttttttctctctttt 99  Q
    |||||||||||| |||||||||||||||||||||    
T  32687879 aacttttggtgataacttcttttttctctctttt 32687912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 31249230 - 31249274
Alignment:
Q  55 ccatctcatataacttttggtgacaacttcttttttctctctttt 99  Q
    |||| ||||| |||||||||||||||||| |||||| ||||||||    
T  31249230 ccatttcatacaacttttggtgacaactttttttttttctctttt 31249274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 12066061 - 12066028
Alignment:
Q  66 aacttttggtgacaacttcttttttctctctttt 99  Q
    ||||||||||||||||||||||||||||||||||    
T  12066061 aacttttggtgacaacttcttttttctctctttt 12066028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 12358347 - 12358311
Alignment:
Q  184 ttgtcacaaaatgaatatacatatatcatttctctat 220  Q
    |||||||||||||| | ||||||||||||||||||||    
T  12358347 ttgtcacaaaatgattgtacatatatcatttctctat 12358311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 19913947 - 19913903
Alignment:
Q  55 ccatctcatataacttttggtgacaacttcttttttctctctttt 99  Q
    |||| ||||| |||||| ||||||||||| |||||||||||||||    
T  19913947 ccatttcatacaactttcggtgacaactttttttttctctctttt 19913903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 30996870 - 30996830
Alignment:
Q  60 tcatataacttttggtgacaacttcttttttctctcttttt 100  Q
    ||||| || |||||||||||||||||||| |||||||||||    
T  30996870 tcatacaatttttggtgacaacttcttttctctctcttttt 30996830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 45515508 - 45515551
Alignment:
Q  55 ccatctcatataacttttggtgacaacttcttttttctctctttt 99  Q
    |||| ||||| ||||||||||||||||||| ||||||||||||||    
T  45515508 ccatttcatacaacttttggtgacaacttc-tttttctctctttt 45515551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 9954700 - 9954667
Alignment:
Q  66 aacttttggtgacaacttcttttttctctctttt 99  Q
    ||||||||||||||||||||| ||||||||||||    
T  9954700 aacttttggtgacaacttcttctttctctctttt 9954667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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