View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11530_low_7 (Length: 496)
Name: NF11530_low_7
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11530_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 38 - 481
Target Start/End: Complemental strand, 13400493 - 13400052
Alignment:
| Q |
38 |
cttccataaagagataaaatattgtttaaaaggagtaagagagaaaatattgttcaaaaggaagaatgtgttataaatggtgagtcagattctcaataaa |
137 |
Q |
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| T |
13400493 |
cttccataaagagataaaatattgtttaaaaggaataagaaa-aaaatattgttcaaaaggaagaatgtgttataaatggtgagtcagattctcaataaa |
13400395 |
T |
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| Q |
138 |
tattagtcatcgacaaagttgatggatacttccttcctaataataagatgtttnnnnnnnntccactataaaagtctcctggttgtgttgaatactttgc |
237 |
Q |
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| T |
13400394 |
tattagtcatcgacaaagttgatggatacttccttcctactaataagatgtttaaaaaaaattcagtataaa-gtcttctggttgtgttgaatactttgc |
13400296 |
T |
|
| Q |
238 |
accacattagggcaaaaagaaaatgcagtcactacaatcctttgttttcatcttaatatttgtagtacttgcttttgatgtttgtgaatcacaagattgt |
337 |
Q |
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| T |
13400295 |
accacattagggtaaaaagaaaatgcagtcactacaatcctttgttttcatcttaatatttttagtacttgcttttgatgtttgtgaatcacaagattgt |
13400196 |
T |
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| Q |
338 |
agcagtcctttcaagatcattacagtcagtgaatcaggcgaaacaaatttccatacaattcaaagtgccgttgattctgtccctgaaggaaattctcaat |
437 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
13400195 |
agcagtcctttcaagatcattacagtcagtgaatcaggcgaaacaaatttccaaacaattcaaagtgccattgattctgtccctgatggaaattctcaat |
13400096 |
T |
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| Q |
438 |
ggattcacatccaaatttcccctggtgtttataggtatatttct |
481 |
Q |
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| T |
13400095 |
ggattcacatccaaatttcccctggtgtttataggtatatttct |
13400052 |
T |
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