View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11530_low_9 (Length: 453)

Name: NF11530_low_9
Description: NF11530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11530_low_9
NF11530_low_9
[»] chr2 (4 HSPs)
chr2 (18-439)||(31645668-31646090)
chr2 (349-391)||(3044185-3044227)
chr2 (349-393)||(10166461-10166505)
chr2 (354-398)||(23480920-23480964)
[»] chr1 (6 HSPs)
chr1 (282-430)||(36016666-36016819)
chr1 (349-391)||(20505490-20505532)
chr1 (349-391)||(26676744-26676786)
chr1 (348-391)||(28756690-28756733)
chr1 (323-388)||(2884052-2884117)
chr1 (348-393)||(42966902-42966947)
[»] chr8 (4 HSPs)
chr8 (284-430)||(30998497-30998649)
chr8 (349-391)||(9932309-9932351)
chr8 (349-391)||(25582794-25582836)
chr8 (334-388)||(27529558-27529612)
[»] chr5 (3 HSPs)
chr5 (349-391)||(26369148-26369190)
chr5 (334-398)||(15259086-15259150)
chr5 (354-398)||(35101388-35101432)
[»] chr4 (3 HSPs)
chr4 (349-391)||(40850659-40850701)
chr4 (349-391)||(47590668-47590710)
chr4 (349-391)||(56024890-56024932)
[»] chr3 (3 HSPs)
chr3 (349-391)||(10436644-10436686)
chr3 (348-391)||(15029926-15029969)
chr3 (354-427)||(22649500-22649573)
[»] chr7 (2 HSPs)
chr7 (349-391)||(8123973-8124015)
chr7 (349-391)||(40858233-40858275)
[»] chr6 (3 HSPs)
chr6 (349-391)||(6029175-6029217)
chr6 (349-394)||(18972823-18972868)
chr6 (354-391)||(30987220-30987257)


Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 439
Target Start/End: Complemental strand, 31646090 - 31645668
Alignment:
Q  18 acaaaggtaacgcagactttgtaggagccaggtagtttcacttcacta--ggtcatcttattcaacacctttattaaaaggacaccttaacccgatgaaa 115  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31646090 acaaaggtaacgcggactttgtagaagccaggtagtttcacttcactataggtcatcttattcaacacctttattaaaaggacaccttaacccaatgaaa 31645991  T
Q  116 caaattgtggatatannnnnnnnaagaagttaaaataaaa--tatattgactcaaaaacttaggaattctagaacagtataaggagtgttgaaaacccta 213  Q
    |||||||||  ||||        |||||||||||||||||  |||||||||||||||||||||||||||      || |||| ||||| |||||||||||    
T  31645990 caaattgtgtttatatttttt--aagaagttaaaataaaaaatatattgactcaaaaacttaggaattc------agcataaagagtgctgaaaacccta 31645899  T
Q  214 caaagcaagtaataaataacatcaaatactaaaggaaatgcgaaatcaaaaaagtttaaagcccctcgattacaaaatgatttacaaacaaactaaagga 313  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  31645898 caaagcaagtaataaataacatcaaataccaaaggaaatgcgaaatcaaaaaagtttaaagcgcctcgattacaaaatgattcacaaacaaactaaagga 31645799  T
Q  314 ttaaacca-----tgtgataagtagaagccaaattaatctgattagctttcagccaccaataagattgaagcttaattttatcaaaaagagtttgtaaag 408  Q
    ||||||||     ||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31645798 ttaaaccaccacgtgtgataagtagaagccaaattaatctgattcgctttcggccaccaataaaattgaagcttaattttatcaaaaagagtttgtaaag 31645699  T
Q  409 agtcctcttgttgatgaaacacacgataatt 439  Q
    ||||||||||||||  |||||||||||||||    
T  31645698 agtcctcttgttgacaaaacacacgataatt 31645668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 3044227 - 3044185
Alignment:
Q  349 gattagctttcagccaccaataagattgaagcttaattttatc 391  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  3044227 gattagctttcagccaccagtaagattgaagcttaactttatc 3044185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 393
Target Start/End: Complemental strand, 10166505 - 10166461
Alignment:
Q  349 gattagctttcagccaccaataagattgaagcttaattttatcaa 393  Q
    |||| ||||| ||||||||||||||||| | ||||||||||||||    
T  10166505 gatttgcttttagccaccaataagattgcaacttaattttatcaa 10166461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 23480964 - 23480920
Alignment:
Q  354 gctttcagccaccaataagattgaagcttaattttatcaaaaaga 398  Q
    ||||| |||||| |||||||||||||||||||||| |||| ||||    
T  23480964 gcttttagccactaataagattgaagcttaattttgtcaagaaga 23480920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 282 - 430
Target Start/End: Complemental strand, 36016819 - 36016666
Alignment:
Q  282 attacaaaatgatttacaaacaaactaaaggattaaacca-----tgtgataagtagaagccaaattaatctgattagctttcagccaccaataagattg 376  Q
    ||||||||||||||  |||||||  |||||||||||||||     ||||||||||| ||||  |||||||| |||| |||||||||||||| ||||||||    
T  36016819 attacaaaatgattctcaaacaagttaaaggattaaaccactacatgtgataagtaaaagcagaattaatccgatttgctttcagccaccattaagattg 36016720  T
Q  377 aagcttaattttatcaaaaagagtttgtaaagagtcctcttgttgatgaaacac 430  Q
    |||||| ||||| || | || | ||||||||||| |||||| || | |||||||    
T  36016719 aagcttgattttgtcgagaaaactttgtaaagaggcctcttttttaggaaacac 36016666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 20505532 - 20505490
Alignment:
Q  349 gattagctttcagccaccaataagattgaagcttaattttatc 391  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  20505532 gattagctttcagccaccagtaagattgaagcttaactttatc 20505490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 26676786 - 26676744
Alignment:
Q  349 gattagctttcagccaccaataagattgaagcttaattttatc 391  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  26676786 gattagctttcagccaccagtaagattgaagcttaactttatc 26676744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 391
Target Start/End: Original strand, 28756690 - 28756733
Alignment:
Q  348 tgattagctttcagccaccaataagattgaagcttaattttatc 391  Q
    ||||| |||||||||||||| |||||||||||||||| ||||||    
T  28756690 tgatttgctttcagccaccagtaagattgaagcttaactttatc 28756733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 388
Target Start/End: Complemental strand, 2884117 - 2884052
Alignment:
Q  323 gtgataagtagaagccaaattaatctgattagctttcagccaccaataagattgaagcttaatttt 388  Q
    |||||| ||| |||| |||||||| | ||  |||||||||||||| ||| ||||||||||||||||    
T  2884117 gtgataggtaaaagctaaattaattttatgcgctttcagccaccagtaatattgaagcttaatttt 2884052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 393
Target Start/End: Original strand, 42966902 - 42966947
Alignment:
Q  348 tgattagctttcagccaccaataagattgaagcttaattttatcaa 393  Q
    ||||| ||||| |||||  |||||||||||||||||||||||||||    
T  42966902 tgatttgcttttagccattaataagattgaagcttaattttatcaa 42966947  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 430
Target Start/End: Original strand, 30998497 - 30998649
Alignment:
Q  284 tacaaaatgatttacaaacaaactaaaggattaaac-----catgtgataagtagaagccaaattaatctgattagctttcagccaccaataagattgaa 378  Q
    |||||||||||| |||| ||| ||||||| |||| |     ||||||||||||| |||| ||||||| | |||| |||||||| || ||||| |||||||    
T  30998497 tacaaaatgattcacaagcaagctaaagggttaagctaccacatgtgataagtaaaagcaaaattaagccgattcgctttcagacatcaatatgattgaa 30998596  T
Q  379 gcttaattttatcaaaaagagtttgt-aaagagtcctcttgttgatgaaacac 430  Q
     ||||||||| |||| |||| ||||| ||||||  ||||| ||||||||||||    
T  30998597 acttaattttgtcaagaagaatttgtaaaagaggtctctttttgatgaaacac 30998649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 9932309 - 9932351
Alignment:
Q  349 gattagctttcagccaccaataagattgaagcttaattttatc 391  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  9932309 gattagctttcagccaccagtaagattgaagcttaactttatc 9932351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 25582794 - 25582836
Alignment:
Q  349 gattagctttcagccaccaataagattgaagcttaattttatc 391  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  25582794 gattagctttcagccaccagtaagattgaagcttaactttatc 25582836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 388
Target Start/End: Complemental strand, 27529612 - 27529558
Alignment:
Q  334 aagccaaattaatctgattagctttcagccaccaataagattgaagcttaatttt 388  Q
    |||| ||||| |||||||| |||||||||||||| || ||||||| |||||||||    
T  27529612 aagcaaaattgatctgatttgctttcagccaccactatgattgaaacttaatttt 27529558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 26369148 - 26369190
Alignment:
Q  349 gattagctttcagccaccaataagattgaagcttaattttatc 391  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  26369148 gattagctttcagccaccagtaagattgaagcttaactttatc 26369190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 15259086 - 15259150
Alignment:
Q  334 aagccaaattaatctgattagctttcagccaccaataagattgaagcttaattttatcaaaaaga 398  Q
    |||| |||||||| ||||| ||||||| ||| ||  ||||||||||||||||||| |||| ||||    
T  15259086 aagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaaga 15259150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 35101388 - 35101432
Alignment:
Q  354 gctttcagccaccaataagattgaagcttaattttatcaaaaaga 398  Q
    ||||||| ||| ||||||||||||||||||||||| |||| ||||    
T  35101388 gctttcaaccatcaataagattgaagcttaattttgtcaagaaga 35101432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 40850701 - 40850659
Alignment:
Q  349 gattagctttcagccaccaataagattgaagcttaattttatc 391  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  40850701 gattagctttcagccaccagtaagattgaagcttaactttatc 40850659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 47590668 - 47590710
Alignment:
Q  349 gattagctttcagccaccaataagattgaagcttaattttatc 391  Q
    |||| ||||||||||||||||||||||||||||||| ||||||    
T  47590668 gatttgctttcagccaccaataagattgaagcttaactttatc 47590710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 56024932 - 56024890
Alignment:
Q  349 gattagctttcagccaccaataagattgaagcttaattttatc 391  Q
    |||| |||||||||||||| |||||||||||||||| ||||||    
T  56024932 gatttgctttcagccaccagtaagattgaagcttaactttatc 56024890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 10436644 - 10436686
Alignment:
Q  349 gattagctttcagccaccaataagattgaagcttaattttatc 391  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  10436644 gattagctttcagccaccagtaagattgaagcttaactttatc 10436686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 391
Target Start/End: Complemental strand, 15029969 - 15029926
Alignment:
Q  348 tgattagctttcagccaccaataagattgaagcttaattttatc 391  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||||    
T  15029969 tgattcgctttcaaccaccaataagattgaagcttaactttatc 15029926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 427
Target Start/End: Complemental strand, 22649573 - 22649500
Alignment:
Q  354 gctttcagccaccaataagattgaagcttaattttatcaaaaagagtttgtaaagagtcctcttgttgatgaaa 427  Q
    ||||||||||||||| ||| ||||||||||||||| ||||  ||  ||||||| |||  |||||||||| ||||    
T  22649573 gctttcagccaccaaaaagtttgaagcttaattttgtcaagtagtttttgtaacgaggactcttgttgacgaaa 22649500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 8124015 - 8123973
Alignment:
Q  349 gattagctttcagccaccaataagattgaagcttaattttatc 391  Q
    |||||||||||| |||||| |||||||||||||||| ||||||    
T  8124015 gattagctttcaaccaccagtaagattgaagcttaactttatc 8123973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 40858233 - 40858275
Alignment:
Q  349 gattagctttcagccaccaataagattgaagcttaattttatc 391  Q
    |||||||||||||||| || |||||||||||||||| ||||||    
T  40858233 gattagctttcagccatcagtaagattgaagcttaactttatc 40858275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 6029217 - 6029175
Alignment:
Q  349 gattagctttcagccaccaataagattgaagcttaattttatc 391  Q
    |||| |||||||||||| |||||||||||||||||| ||||||    
T  6029217 gattcgctttcagccactaataagattgaagcttaactttatc 6029175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 394
Target Start/End: Original strand, 18972823 - 18972868
Alignment:
Q  349 gattagctttcagccaccaataagattgaagcttaattttatcaaa 394  Q
    |||| |||||||||||| | |||||||||||||||| |||||||||    
T  18972823 gatttgctttcagccacgagtaagattgaagcttaactttatcaaa 18972868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 391
Target Start/End: Original strand, 30987220 - 30987257
Alignment:
Q  354 gctttcagccaccaataagattgaagcttaattttatc 391  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  30987220 gctttcagccaccaatatgattgaagtttaattttatc 30987257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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