View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11531_high_12 (Length: 241)
Name: NF11531_high_12
Description: NF11531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11531_high_12 |
 | |
|
| [»] scaffold0031 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0031 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 43797 - 43604
Alignment:
| Q |
8 |
tggacatcaaaaaggcaattgaaaaatacatgagtgagatctacgtgatgcgatggacaactaacacaatttgtaaaacattgaacgcccttgtcaagaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
43797 |
tggacatcaaaaaggcaattgaaaaatacatgagtgagatctacgtgatgcgatggacaactaacacaatttgtaagacattgaacgtccttgtcaagaa |
43698 |
T |
|
| Q |
108 |
aacaaacacgagtcagaacaaaagatcttcatgatgcgatatactttgttggttatttatagtttactttttaactttaaatatgactgttgat |
201 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43697 |
gacaaacacgagtcagaacacaagatcttcatgatgcgatatactttgttggttatttatagtttactttttaactttaaatatgactgttgat |
43604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 19234905 - 19234801
Alignment:
| Q |
17 |
aaaaggcaattgaaaaatacatgagtgagatctacgtgatgcgatggacaactaacacaatttgtaaaacattgaacgcccttgtcaagaaaacaaacac |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||| | | |||||||||| |||||||||| |||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
19234905 |
aaaaggcaattgaaaaatacatgagcaagatcttcattatgcgatggataactaacacagtttgtaggacattgaacgcccttgtcaagaagacgaacac |
19234806 |
T |
|
| Q |
117 |
gagtc |
121 |
Q |
| |
|
||||| |
|
|
| T |
19234805 |
gagtc |
19234801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 13685319 - 13685206
Alignment:
| Q |
8 |
tggacatcaaaaaggcaattgaaaaatacatgagtgagatctacgtgatgcgatggacaactaacacaatttgtaaaacattgaacgcccttgtcaagaa |
107 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||| |||||| | ||||| ||||||||||||||||| |||||| | ||||||||||||||| || || |
|
|
| T |
13685319 |
tggacagcaaaagggcaattgaaaaatacatgaggaagatcttcatgatgtgatggacaactaacacagtttgtaggatattgaacgcccttgttaaaaa |
13685220 |
T |
|
| Q |
108 |
aacaaacacgagtc |
121 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
13685219 |
gacgaacacgagtc |
13685206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 11819216 - 11819313
Alignment:
| Q |
8 |
tggacatcaaaaaggcaattgaaaaatacatgagtgagatctacgtgatgcgatggacaactaacacaatttgtaaaacattgaacgcccttgtcaag |
105 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||| ||| || | ||||| ||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
11819216 |
tggacagcaaaagggcaattgaaaaatacatgagcaagaacttcatgatgtgatggacaactaacacagtttgtaggacattgaacgcccttgtcaag |
11819313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 23576571 - 23576668
Alignment:
| Q |
8 |
tggacatcaaaaaggcaattgaaaaatacatgagtgagatctacgtgatgcgatggacaactaacacaatttgtaaaacattgaacgcccttgtcaag |
105 |
Q |
| |
|
|||||| ||||| |||||||||||| |||||||| |||||| | ||||| ||||||||||||||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
23576571 |
tggacagcaaaagggcaattgaaaagtacatgagcaagatcttcatgatgtgatggacaactaacacagtttgtaggacattgagcgcccttgtcaag |
23576668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 49701738 - 49701638
Alignment:
| Q |
21 |
ggcaattgaaaaatacatgagtgagatctacgtgatgcgatggacaactaacacaatttgtaaaacattgaacgcccttgtcaagaaaacaaacacgagt |
120 |
Q |
| |
|
||||||||||||| ||||||| || ||| | ||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||| || ||||||||| |
|
|
| T |
49701738 |
ggcaattgaaaaaaacatgagcaaggtcttcatgatgcgattgacaactaacacaatttgtaggacattaaacgcccttgttaagaagactaacacgagt |
49701639 |
T |
|
| Q |
121 |
c |
121 |
Q |
| |
|
| |
|
|
| T |
49701638 |
c |
49701638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University