View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11531_high_6 (Length: 471)
Name: NF11531_high_6
Description: NF11531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11531_high_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 27 - 471
Target Start/End: Complemental strand, 8200948 - 8200501
Alignment:
| Q |
27 |
ctagattgcaatgaaactaaactatagtgtcatcacacttgtactatactggtgtgtgactcgtaaaggaggagtgaagtgatgtgaagagggtttccta |
126 |
Q |
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| T |
8200948 |
ctagattgcaatgaaactaaactatagtgtcatcacacttgtactatactggtgtgtgactcgtaaaggaggagtgaagtgatgtgaagagggtttccta |
8200849 |
T |
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| Q |
127 |
aataggtaatgtgttatttgctatgaaaggaaaagtagggttggaatgtaactgcaaatagattctaaattgatgtgaatgtgaaagtgaaagtagtgtg |
226 |
Q |
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| T |
8200848 |
aataggaaatgtgttatttgctatgaaaggaaaagtagggttggaatgtaactgcaaatagattctaaattgatgtgaatgtgaaagtgaaagtagtgtg |
8200749 |
T |
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| Q |
227 |
tgatcagaagcaaacttcaacactattacattattgttattcaatggacagttggcacattttaattaattttcacctacctcttcttacttcaatttat |
326 |
Q |
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| T |
8200748 |
tgatcagaagcaaacttcaacacaattacattattgttattcaatggacagttggcacattttaattaattctcacctacctcttcttacttcaatttat |
8200649 |
T |
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| Q |
327 |
tattaggcccctaggacagacactatttacaataatcttcatcatatcatcattaagttttgttttgatcaat---cttcatgaggtaggatatttaagt |
423 |
Q |
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| T |
8200648 |
tattaggcccctaggacacacactatgtacaataatattcatcatatcatcattaagttttgttttgatcaatcttcttcatgaggtaggatatttaagt |
8200549 |
T |
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| Q |
424 |
cgtttttcatacacatgtggttggagtattaagttgttttttcttctc |
471 |
Q |
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| T |
8200548 |
cgtttttcatacacatgtggtaggagtattaagttgttttttcttctc |
8200501 |
T |
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