View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11531_low_1 (Length: 762)
Name: NF11531_low_1
Description: NF11531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11531_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 376 - 745
Target Start/End: Original strand, 2252718 - 2253087
Alignment:
| Q |
376 |
tgaggttaattgaagctccattgataggtcctttcttgttgactatgttgaagaaggaaaataaaattgatcaggtttgtgtcactcattgagttagtgt |
475 |
Q |
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| T |
2252718 |
tgaggttaattgaagctccattgataggtcctttcttgttgactatgttgaagaaggaaaataaaattgatcaggtttgtgtcactcattgagttagtgt |
2252817 |
T |
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| Q |
476 |
gtttgaatttttctgttgcttaaattgttactcgtgtttgcgcattttactttgaagaagttttttcttcagttgtgtcgttataatattttgagtaggt |
575 |
Q |
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| T |
2252818 |
gtttgaatttttctgttgcttaaattgttactcgtgtttgcgcattttactttgaagaagttttttcttcagttgtgtcgttataatattttgagtaggt |
2252917 |
T |
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| Q |
576 |
tgtgaactacactaacatctaagttatataactgacacttcagattgaaagtgtatttgagtgtctgacacatgtcgatgtccaaagctgatatgacatt |
675 |
Q |
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| T |
2252918 |
tgtgaactacaccaacatctaagttatataactgacacttcaaattgaaagcgtatttgagtgtctgacacatgtcgatgtccaaagctgatatgacatt |
2253017 |
T |
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| Q |
676 |
gacaccttacaagcacttttaatttttaaaaccatttttagtgcctagctatcggtgtcatgtctgatgt |
745 |
Q |
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| T |
2253018 |
gacaccttacaagcacttttaatttttaaaaccatttttagtgcctagctatcggtgtcatgtctgatgt |
2253087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 21 - 311
Target Start/End: Original strand, 2252349 - 2252641
Alignment:
| Q |
21 |
acacctctctttctacttctacgtttgtttcttctacactcttcaatttgcatttccaatttcaacttcctttttcgctaactacaacaattccaatctg |
120 |
Q |
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| T |
2252349 |
acacctctctttctacttctacgtttgtttcttctactctcttcaatttgcatttccaatttcaacttcctttttcgctaactacaacaattccaatctg |
2252448 |
T |
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| Q |
121 |
taacagttagttaagctcgcgcgtttt--tctttttgatttctgaagatggggaagaagcgtgtaatggtgccggcgaaggacgtagatttgtcttcaat |
218 |
Q |
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||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2252449 |
taacagttagttaagctcgcgcgttttatttttttttatttctgaagatggggaagaagcgtgtaatggtgccggcgaaggacgtagatttgtcttcaat |
2252548 |
T |
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| Q |
219 |
caaatacgaacctgaaattgttcaaggttattcattcattccactaactttaattgcttcttctttcgttaaccaatttcactccaattcaac |
311 |
Q |
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| T |
2252549 |
caaatacgaacctgaaattgttcaaggttattcattcattccactaactttaattgcttcttctttcgttaaccaatttcactccaattcaac |
2252641 |
T |
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