View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11531_low_10 (Length: 361)

Name: NF11531_low_10
Description: NF11531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11531_low_10
NF11531_low_10
[»] chr2 (3 HSPs)
chr2 (282-350)||(45105476-45105544)
chr2 (17-85)||(45105202-45105270)
chr2 (151-212)||(45105339-45105400)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 45105476 - 45105544
Alignment:
Q  282 tgttacaataacatgatgataagaaaaaacaatatatttacttttgggtatatgtgatattgacttctt 350  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45105476 tgttacgataacatgatgataagaaaaaacaatatatttacttttgggtatatgtgatattgacttctt 45105544  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 45105202 - 45105270
Alignment:
Q  17 ataaatatgatatttaaaagtttaagtaaatcgtactgttactagaaatagtaaatgtccaccgtttac 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  45105202 ataaatatgatatttaaaagtttaagtaaatcgtactgttactagaaatagtaaaagtctaccgtttac 45105270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 45105339 - 45105400
Alignment:
Q  151 aatggtgcactaagacgagaagcaaaccaacgtcaaacttagatgaaattgtgaacaagttt 212  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45105339 aatggtgcactaagacgagaagaaaaccaacgtcaaacttagatgaaattgtgaacaagttt 45105400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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