View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11531_low_16 (Length: 211)

Name: NF11531_low_16
Description: NF11531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11531_low_16
NF11531_low_16
[»] chr5 (2 HSPs)
chr5 (49-188)||(40599708-40599845)
chr5 (49-188)||(42268611-42268749)
[»] chr7 (2 HSPs)
chr7 (49-184)||(43032282-43032415)
chr7 (49-188)||(24718209-24718346)
[»] chr3 (1 HSPs)
chr3 (49-184)||(31699417-31699551)
[»] chr1 (1 HSPs)
chr1 (112-188)||(2077225-2077300)
[»] chr2 (1 HSPs)
chr2 (49-178)||(9910838-9910966)


Alignment Details
Target: chr5 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 49 - 188
Target Start/End: Complemental strand, 40599845 - 40599708
Alignment:
Q  49 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnnngacaccattacattccaactaccaacccaagtgcaaaaacctta 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  40599845 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcaaaaaa--gacaccattacattccaactaccaacccaagtgcaaaaacctta 40599748  T
Q  149 tgtaaccaacactaataaccacccacatcatcgttaactc 188  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  40599747 tgtaaccaacactaataaccacccacatcatcgttgactc 40599708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 188
Target Start/End: Complemental strand, 42268749 - 42268611
Alignment:
Q  49 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnnngacaccatt-acattccaactaccaacccaagtgcaaaaacctt 147  Q
    |||||||||||| |||| | ||| ||||||||||||||||||||| ||        ||||||||| || || ||||| |||||||||   |||||||  |    
T  42268749 ccaactcacaagtttctaatcattaacaccaaaatatcaccaccacgcaaaaaa--gacaccatttacgtttcaactcccaacccaacaacaaaaacaat 42268652  T
Q  148 atgtaaccaacactaataaccacccacatcatcgttaactc 188  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  42268651 atgtaaccaacaccaataaccacccacatcatcgttaactc 42268611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 49 - 184
Target Start/End: Complemental strand, 43032415 - 43032282
Alignment:
Q  49 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnnngacaccatt-acattccaactaccaacccaagtgcaaaaacctt 147  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||| ||         |||||||| |||||| |||| |||||||||  |||||| ||||    
T  43032415 ccaacacacaagcttctcatcatcaacaccaaaatatcaccaccacgcaaaaaat--acaccatttacattctaactcccaacccaacagcaaaa-cctt 43032319  T
Q  148 atgtaaccaacactaataaccacccacatcatcgtta 184  Q
    ||||||||||||| |||||||||||||||||||||||    
T  43032318 atgtaaccaacaccaataaccacccacatcatcgtta 43032282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 188
Target Start/End: Original strand, 24718209 - 24718346
Alignment:
Q  49 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnnngacaccatt-acattccaactaccaacccaagtgcaaaaacctt 147  Q
    ||||||||||||||||| | ||| || ||||||||||||||||||  |        ||||||||| || || ||||| |||||||||   |||||||       
T  24718209 ccaactcacaagcttctaatcattaataccaaaatatcaccacca--cacaaaaaagacaccatttacgtttcaactcccaacccaacaacaaaaacaa- 24718305  T
Q  148 atgtaaccaacactaataaccacccacatcatcgttaactc 188  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  24718306 atgtaaccaacaccaataaccacccacatcatcgttaactc 24718346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 184
Target Start/End: Original strand, 31699417 - 31699551
Alignment:
Q  49 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnnngacacca-ttacattccaactaccaacccaagtgcaaaaacctt 147  Q
    ||||||||||||||||| | |||||||||||||||||||||||||| |        ||||||| |||| |||||||| |||||||||   ||||||||||    
T  31699417 ccaactcacaagcttctaatcatcaacaccaaaatatcaccaccatac--aaaaaagacaccatttacgttccaactcccaacccaacaacaaaaacctt 31699514  T
Q  148 atgtaaccaacactaataaccacccacatcatcgtta 184  Q
    | ||| |||||||  |||| |||||||||||||||||    
T  31699515 acgtagccaacacctataagcacccacatcatcgtta 31699551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 2077300 - 2077225
Alignment:
Q  112 ttacattccaactaccaacccaagtgcaaaaaccttatgtaaccaacactaataaccacccacatcatcgttaactc 188  Q
    ||||||||||| | |||||||||   ||||||||| ||||||||| ||| |||||||||||||||||||||||||||    
T  2077300 ttacattccaaatcccaacccaacatcaaaaacct-atgtaaccatcaccaataaccacccacatcatcgttaactc 2077225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 178
Target Start/End: Original strand, 9910838 - 9910966
Alignment:
Q  49 ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnnngacaccattaca-ttccaactaccaacccaagtgcaaaaacctt 147  Q
    |||||| |||||||||| | ||||||||||||||||||||||||| ||         ||||||||  | ||| |||| |||||||||  | |||||||||    
T  9910838 ccaacttacaagcttctaatcatcaacaccaaaatatcaccaccacgcaaaaaat--acaccatttaagttcaaactcccaacccaacaggaaaaacctt 9910935  T
Q  148 atgtaaccaacactaataaccacccacatca 178  Q
    |||||||||||||  ||||||||||||||||    
T  9910936 atgtaaccaacacctataaccacccacatca 9910966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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