View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11531_low_3 (Length: 648)
Name: NF11531_low_3
Description: NF11531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11531_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 218 - 631
Target Start/End: Original strand, 10130130 - 10130537
Alignment:
| Q |
218 |
taagaagttctggacaaggaagaagaaagggaaagtcaaggggcatttaggtcttttcgcacgtcactgagttcattaagggcaaaaatggaagttcaaa |
317 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10130130 |
taagaagttctggacagggaagaagaaagggaaagtcagggggcatttaggtctttttgcgcgtcactgagttcattaagggcaaaaatggaagttcaag |
10130229 |
T |
|
| Q |
318 |
tgtaaaaagttgagtcagcgaggtggttgtccagtcagctgatgccatgtaggcgccacgttactaatcactt--cacatatgcaattaaactcaattta |
415 |
Q |
| |
|
||||||| | |||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10130230 |
tgtaaaa-gctgagtcggcgagatggttacccagtcagctgatgccatgtaggcgccacgttactaatcacttgacacatatgcaattaaactcaattta |
10130328 |
T |
|
| Q |
416 |
aaaagtccatttgcccggtagcatcacattaatcctaatctcgaaagttgtttcttcctcgtttcattcaaccaaggtagagtaattaactctctcgtta |
515 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10130329 |
aaaagtccatttggccggtagcatcacattaatcctaatctcgaaaattgtttcttcctcgtttcattcaaccaaggtagagtaattaactctctcgtt- |
10130427 |
T |
|
| Q |
516 |
gttaccagttaccactaatcaataatctcagccatcctcatgctttcttcacgatcgtttcattctcctttgttcttaaatcaccgtttttacctccgtt |
615 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10130428 |
------aattaccactaatcaataatctcagccatcctcatgctttcttcacgatcgtttcattctcctctgttcttaaatcaccgtttttacctccgtt |
10130521 |
T |
|
| Q |
616 |
tcttgatgggtgaaac |
631 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
10130522 |
tcttgatgggtgaaac |
10130537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 52 - 224
Target Start/End: Original strand, 10129933 - 10130105
Alignment:
| Q |
52 |
gttgctgggttcattaaggggataagagaagatgttttaaacaaggccttgctcctcaattctcacctagaggaacatgaaatgtgctgaaaatgtgaaa |
151 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| | || ||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
10129933 |
gttgctgggttcattatggggataagagaagatgttctgaagtgggccttgctcctcaattctcacctacaggaacatgaaatgtgttgaaaatgggaaa |
10130032 |
T |
|
| Q |
152 |
tctacttacccagatctacgggatgcgaattgggattcaacatttgtgaaggatgaagaagccttgtaagaag |
224 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10130033 |
tctacttacccagatctactggatgcgaattgggattcaacatttgtgaaggatgaagaagccttgtaagaag |
10130105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 30226970 - 30227063
Alignment:
| Q |
120 |
agaggaacatgaaatgtgctgaaaatgtgaaatctacttacccagatctacgggatgcgaattgggattcaacatttgtgaaggatgaagaagc |
213 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30226970 |
agaggaacattaaatgtgctgaaaatgggaaatctacttacccagttctactggatgcggattgggattcaacatttgtgaaggatgaagaagc |
30227063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 388
Target Start/End: Complemental strand, 39525916 - 39525817
Alignment:
| Q |
289 |
ttcattaagggcaaaaatggaagttcaaatgtaaaaagttgagtcagcgaggtggttgtccagtcagctgatgccatgtaggcgccacgttactaatcac |
388 |
Q |
| |
|
|||||||| ||||||| |||| ||||| || |||||||||||||||| | ||||| |||||| | ||||||||| ||||||||||||| |||||||| |
|
|
| T |
39525916 |
ttcattaaaggcaaaatgggaatttcaagtggaaaaagttgagtcagcctgctggttttccagttacctgatgccacgtaggcgccacgtatctaatcac |
39525817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 4140298 - 4140249
Alignment:
| Q |
309 |
aagttcaaatgtaaaaagttgagtcagcgaggtggttgtccagtcagctg |
358 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| || |||| ||||||| |
|
|
| T |
4140298 |
aagttcacatgtaaaaagctgagtcagcgaggtgcttatccaatcagctg |
4140249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University