View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11531_low_4 (Length: 626)
Name: NF11531_low_4
Description: NF11531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11531_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 50 - 600
Target Start/End: Original strand, 40599038 - 40599582
Alignment:
| Q |
50 |
atgttgttttacatacaattttattgcatttcttaatctgtgtgtatagactttgaacgactgtatgcactttaaaatggagagagtaactgaaacaaaa |
149 |
Q |
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| T |
40599038 |
atgttgttttacatacaattttattgcatttcttactctgtgtgtacagactttgaacgac-gtatgcaatttaaaacggagagagtaactgaaacaaaa |
40599136 |
T |
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| Q |
150 |
atttaaatgaaaggaattggaactcacacatgttgcagcatggagaaaggatgtatcaatgaattttgaataaatgaatgtctcttagcttcaactctta |
249 |
Q |
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| T |
40599137 |
atttaaatgaaaggaattggaactcacacatgttgcagcatgcataaaggatgtatcaatgaattttgaataaatgaatgtctcttagcttcaactctta |
40599236 |
T |
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| Q |
250 |
gcttcaaagtagaaggatagtcaacaaataaatggttggagggtgagtggtagatgtatatattgtgaagtgtgatgtgatcagcttccaactagactct |
349 |
Q |
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| T |
40599237 |
gcttcaaagtagaaggttagtcaacaaataaatggttggagggtgagtggtagatgtatatattgtgaagtgtgatgtgatcagcttccaactagactct |
40599336 |
T |
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| Q |
350 |
atatatgagatatcatcaagtcaagtccacacttttgtgtagtaacaataatgatggctatgtgattatttcatttcataggaagcttcatttataaata |
449 |
Q |
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| T |
40599337 |
atatatgagatatcatcaagtcaagtccacacttttgtgtagtaacaataatgatggctatgtgatt-----atttcataggaagcttcatttataaata |
40599431 |
T |
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| Q |
450 |
agaagctgattcaaacttgaactcaccaaaacttacaagaaagaaacaagtagtcaacctggtttgtttcttcaacgaaaatacagagaagatagaatgg |
549 |
Q |
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| T |
40599432 |
agaagctgattcaaacttgaactcaccaaaacttacaagaaagaaacaagtagtcaacctggtttgtttcttcaacgaaaatacagagaagatagaatgg |
40599531 |
T |
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| Q |
550 |
ggtcctacttcaattattaatcttggttcggaaaatctgtgggcatataaa |
600 |
Q |
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| T |
40599532 |
ggtcctacttcaattattaatcttggttcggaaaatctgtgggcatataaa |
40599582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 40598970 - 40599006
Alignment:
| Q |
15 |
actatattctattaacaacggtggaaaacacatcaat |
51 |
Q |
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| T |
40598970 |
actatattctattaacgacggtggaaaacacatcaat |
40599006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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