View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11531_low_8 (Length: 412)

Name: NF11531_low_8
Description: NF11531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11531_low_8
NF11531_low_8
[»] chr1 (1 HSPs)
chr1 (17-400)||(44377506-44377889)
[»] chr8 (3 HSPs)
chr8 (17-127)||(38721345-38721455)
chr8 (171-364)||(38721005-38721198)
chr8 (270-366)||(13826250-13826346)
[»] chr2 (2 HSPs)
chr2 (20-81)||(15170638-15170699)
chr2 (213-367)||(5128761-5128915)
[»] chr4 (1 HSPs)
chr4 (27-127)||(54383968-54384068)
[»] chr3 (3 HSPs)
chr3 (216-400)||(1177401-1177585)
chr3 (21-85)||(49592507-49592571)
chr3 (273-364)||(9477841-9477932)
[»] chr7 (2 HSPs)
chr7 (327-366)||(43436252-43436291)
chr7 (195-265)||(44632939-44633009)


Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 17 - 400
Target Start/End: Complemental strand, 44377889 - 44377506
Alignment:
Q  17 gacatcagtaatatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggtctccagttgagcgagaaacataccttgatcgttta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44377889 gacatcagtaatatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggtctccagttgagcgagaaacataccttgatcgttta 44377790  T
Q  117 tcactgaggtacgagaaagaaggaaagccgtgtgaattatctgatattgacatatttgttagtactgtggatcctatgaaagagcctcctcttataactg 216  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44377789 tcactgaggtacgagaaagaaggaaagccgtgtgaattatccgatattgacatatttgttagtactgtggatcctatgaaagagcctcctcttataactg 44377690  T
Q  217 caaacacagttctgtccatcctagcagtagattatccggtggaaaaagtggcgtgctatgtctcagacgacggtgcagctatgctaacatttgaagccct 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44377689 caaacacagttctgtccatcctagcagtagattatccggtggaaaaagtggcgtgctatgtctcagacgacggtgcagctatgctaacatttgaagccct 44377590  T
Q  317 ttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaagttcagcatcgaaccacgggctcctgagtggtattt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  44377589 ttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaagttcagcattgaaccgcgggctcctgagtggtattt 44377506  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 38721455 - 38721345
Alignment:
Q  17 gacatcagtaatatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggtctccagttgagcgagaaacataccttgatcgttta 116  Q
    ||||||||| ||||||||||| |||||||||||||| |||||  |||||||||||||||||||||  ||| |   ||||||||| |||||||| ||| |     
T  38721455 gacatcagtcatatgtgaaatatggtttgctgtatcttggataatggatcagtttccaaaatggtacccaataacgcgagaaacgtaccttgaccgtctt 38721356  T
Q  117 tcactgaggta 127  Q
    |||||||||||    
T  38721355 tcactgaggta 38721345  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 171 - 364
Target Start/End: Complemental strand, 38721198 - 38721005
Alignment:
Q  171 tttgttagtactgtggatcctatgaaagagcctcctcttataactgcaaacacagttctgtccatcctagcagtagattatccggtggaaaaagtggcgt 270  Q
    ||||| |||||||| |||||||||||||| ||||| || || || |||||||| ||||| || ||||| || || || ||||| || || ||||| || |    
T  38721198 tttgtcagtactgttgatcctatgaaagaacctccactgatcacagcaaacactgttctatctatccttgctgttgactatccagttgataaagttgcat 38721099  T
Q  271 gctatgtctcagacgacggtgcagctatgctaacatttgaagccctttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaa 364  Q
    ||||||| || || || ||||| ||||||||||| |||||||| ||||| || || || || ||||| || || |||||||| || ||||||||    
T  38721098 gctatgtttcggatgatggtgctgctatgctaacttttgaagcactttctgagacatctgaatttgctaggaagtgggttccgttttgcaagaa 38721005  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 13826346 - 13826250
Alignment:
Q  270 tgctatgtctcagacgacggtgcagctatgctaacatttgaagccctttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaagt 366  Q
    |||||||| || || ||||| || |||||| | ||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||  ||||||||    
T  13826346 tgctatgtttctgatgacggcgccgctatgttgacatttgaagctcttgctgaaacatcagagtttgcaagaaaatgggttccattcaccaagaagt 13826250  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 15170638 - 15170699
Alignment:
Q  20 atcagtaatatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggt 81  Q
    |||||||||||||||||| ||||||||  ||||||||||  | |||||||||||||||||||    
T  15170638 atcagtaatatgtgaaatatggtttgcattatcatggatacttgatcagtttccaaaatggt 15170699  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 367
Target Start/End: Complemental strand, 5128915 - 5128761
Alignment:
Q  213 actgcaaacacagttctgtccatcctagcagtagattatccggtggaaaaagtggcgtgctatgtctcagacgacggtgcagctatgctaacatttgaag 312  Q
    ||||| ||||||||||| || ||||| || || || ||||| |||||||||||  | || ||||| ||||| || ||||| || ||||| |||||||||     
T  5128915 actgccaacacagttctttctatccttgccgtggactatcctgtggaaaaagtatcatgttatgtttcagatgatggtgctgcaatgctgacatttgaat 5128816  T
Q  313 ccctttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaagtt 367  Q
    |||||   || ||  | || ||||||||||| ||||| ||||| ||||| |||||    
T  5128815 cccttgtggagacagctgactttgcaagaaagtgggtaccattttgcaaaaagtt 5128761  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 54384068 - 54383968
Alignment:
Q  27 atatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggtctccagttgagcgagaaacataccttgatcgtttatcactgaggt 126  Q
    ||||||||||| ||||||||| ||||||||||  | |||||||| || ||||||| |||  ||||  |||||||||||||||| ||| | ||||| ||||    
T  54384068 atatgtgaaatctggtttgctatatcatggatccttgatcagttccccaaatggtatcctattgatagagaaacataccttgaccgtctttcactcaggt 54383969  T
Q  127 a 127  Q
    |    
T  54383968 a 54383968  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 400
Target Start/End: Complemental strand, 1177585 - 1177401
Alignment:
Q  216 gcaaacacagttctgtccatcctagcagtagattatccggtggaaaaagtggcgtgctatgtctcagacgacggtgcagctatgctaacatttgaagccc 315  Q
    |||||||||||||| || || |||||| ||||||| || |  ||||| ||| | || ||||| || || || || ||||| ||| |||||||||| ||      
T  1177585 gcaaacacagttctatcaattctagcaatagattaccctgctgaaaaggtgtcatgttatgtttctgatgatggagcagcaatgttaacatttgaggcat 1177486  T
Q  316 tttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaagttcagcatcgaaccacgggctcctgagtggtattt 400  Q
    | || |||||||| || |||||||| ||||||||||| || || |||||||||| ||| |||||  | ||||| || ||||||||    
T  1177485 tatctgaaacttctgaatttgcaaggaaatgggttcctttttgtaagaagttcaacattgaacctagagctccagaatggtattt 1177401  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 49592571 - 49592507
Alignment:
Q  21 tcagtaatatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggtctcc 85  Q
    ||||| || ||||| |||||||||||  | || ||||||||||||||||||||||||||||||||    
T  49592571 tcagttatctgtgagatttggtttgcattttcctggattttggatcagtttccaaaatggtctcc 49592507  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 364
Target Start/End: Original strand, 9477841 - 9477932
Alignment:
Q  273 tatgtctcagacgacggtgcagctatgctaacatttgaagccctttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaa 364  Q
    |||||||| || || ||||| |||||| | ||||||||||| ||| | || || ||||| |||||||| ||||||||||| |||||||||||    
T  9477841 tatgtctctgatgatggtgctgctatgttgacatttgaagctcttgccgagacatcagaatttgcaaggaaatgggttcctttctgcaagaa 9477932  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 366
Target Start/End: Complemental strand, 43436291 - 43436252
Alignment:
Q  327 tcagagtttgcaagaaaatgggttccattctgcaagaagt 366  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  43436291 tcagagtttgcgagaaaatgggttcctttctgcaagaagt 43436252  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 44632939 - 44633009
Alignment:
Q  195 aaagagcctcctcttataactgcaaacacagttctgtccatcctagcagtagattatccggtggaaaaagt 265  Q
    |||||||| |||||| |||||||||||||  || | || ||||| ||||| |||||||| |||||||||||    
T  44632939 aaagagccacctcttgtaactgcaaacaccattttatctatccttgcagttgattatcctgtggaaaaagt 44633009  T

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