View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11531_low_9 (Length: 371)
Name: NF11531_low_9
Description: NF11531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11531_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 1422930 - 1422577
Alignment:
| Q |
1 |
agaagaggaacatgaacttgagcatgaagagaaagaaaacaataatgagaatcagacaaaagaagttgatcattcggaggttgaaagcgaagtttctgta |
100 |
Q |
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| T |
1422930 |
agaagaggaacatgaacttgagcatgaagagaaagaaaacaataatgagaatcagacagaagaagttgatcattcggaggttgaaagcgaagtttctgta |
1422831 |
T |
|
| Q |
101 |
attgaaaaggaagaaaatgaaagtgagaatcagatagaagaagttgatcgttccgaggttgaaagcgaagtttctgtgattgaaaaggaagaaaaacaaa |
200 |
Q |
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| T |
1422830 |
attgaaaaggaagaaaatgaaagtgagaatcagatagaagaagttgatcgttccgaggttgaaagtgaagtttctgtgattgaaaaggaagaaaatcaaa |
1422731 |
T |
|
| Q |
201 |
gtgagaatcagacagaagatgttgattgttccaaggttgaaatagaagtttctggtaatgaaaaggtagaaattgaaagtgggaatcagagagaagaagt |
300 |
Q |
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| T |
1422730 |
gtgagaatcagacagaagatgttgatcgttccaaggttgaaatcgaagtttctggtaatgaaaaggtagaaattgaaagtgggaatcagagagaagaagt |
1422631 |
T |
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| Q |
301 |
tgatcattctgaggttgaaagcgaagttgctgtgaatgaaaaggaagaaaatga |
354 |
Q |
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| T |
1422630 |
tgatcattttgaggttgaaagcgaagttgctgtgaatgaaaaggaagaaaatga |
1422577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 46 - 285
Target Start/End: Complemental strand, 1422807 - 1422568
Alignment:
| Q |
46 |
tgagaatcagacaaaagaagttgatcattcggaggttgaaagcgaagtttctgtaattgaaaaggaagaaaatgaaagtgagaatcagatagaagaagtt |
145 |
Q |
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| T |
1422807 |
tgagaatcagatagaagaagttgatcgttccgaggttgaaagtgaagtttctgtgattgaaaaggaagaaaatcaaagtgagaatcagacagaagatgtt |
1422708 |
T |
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| Q |
146 |
gatcgttccgaggttgaaagcgaagtttctgtgattgaaaaggaagaaaaacaaagtgagaatcagacagaagatgttgattgttccaaggttgaaatag |
245 |
Q |
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||||||||| ||||||||| ||||||||||| | |||||||| ||||| |||||| |||||||| |||||| |||||| || ||||||||| | |
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| T |
1422707 |
gatcgttccaaggttgaaatcgaagtttctggtaatgaaaaggtagaaattgaaagtgggaatcagagagaagaagttgatcattttgaggttgaaagcg |
1422608 |
T |
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| Q |
246 |
aagtttctggtaatgaaaaggtagaaattgaaagtgggaa |
285 |
Q |
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| T |
1422607 |
aagttgctgtgaatgaaaaggaagaaaatgaaagtgggaa |
1422568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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