View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11532_high_11 (Length: 283)
Name: NF11532_high_11
Description: NF11532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11532_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 69 - 273
Target Start/End: Original strand, 33154743 - 33154949
Alignment:
| Q |
69 |
caacaatactgtgctagttgtacaatgaactcccagctcagcaagagacttatcctaacagt-aaaaagaaaaagaaataa-gtgcaaattttatatatc |
166 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
33154743 |
caacaatactgtgccagttgtacattgaactcccagctcagcaagagacttatcctaacagccaaaaagaaaaagaaataaagtgcaaattttatatatg |
33154842 |
T |
|
| Q |
167 |
aaatattaattacatatgaatagaagataaacgggtaataagatgcactattggacttttttcgatggcaaaatcaatccttttaaacacaaattcataa |
266 |
Q |
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||| ||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||| | |||||||||| |
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| T |
33154843 |
aaagattaattacatgtaaatagaagataagcgggtaataagatgcaccattggacttttttcgattgcaaaattaatccttttaaatataaattcataa |
33154942 |
T |
|
| Q |
267 |
tcctatg |
273 |
Q |
| |
|
||||||| |
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|
| T |
33154943 |
tcctatg |
33154949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 33154162 - 33154210
Alignment:
| Q |
19 |
agatctcattcaggcacaattcgagttttcctacaatggtgcaagtcta |
67 |
Q |
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|
| T |
33154162 |
agatctcattcaggtacaatttgagttttcctacaatggtgcaaatcta |
33154210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 258
Target Start/End: Original strand, 2601675 - 2601777
Alignment:
| Q |
156 |
ttttatatatcaaatattaattacatatgaatagaagataaacgggtaataagatgcactattggacttttttcgatggcaaaatcaatccttttaaaca |
255 |
Q |
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| T |
2601675 |
ttttatatataaagtattaattacacatgaatagaagacaaacggacaacaagctgcatcgttagactttttacagtggcaaaatcaatcctcgtaaaca |
2601774 |
T |
|
| Q |
256 |
caa |
258 |
Q |
| |
|
||| |
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|
| T |
2601775 |
caa |
2601777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 23310485 - 23310410
Alignment:
| Q |
178 |
acatatgaatagaagataaacgggtaataagatgcactattggacttttttcgatggcaaaatcaatccttttaaa |
253 |
Q |
| |
|
|||||||||||||||| |||||| ||| ||||||| || || ||| ||||| |||| ||||| ||||| ||||||| |
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| T |
23310485 |
acatatgaatagaagacaaacggataagaagatgcgctgttagacatttttagatgacaaaaccaatcattttaaa |
23310410 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 2520983 - 2520946
Alignment:
| Q |
155 |
attttatatatcaaatattaattacatatgaatagaag |
192 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||| |
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|
| T |
2520983 |
attttatatatcaaagattaattacacatgaatagaag |
2520946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 39231691 - 39231650
Alignment:
| Q |
159 |
tatatatcaaatattaattacatatgaatagaagataaacgg |
200 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||| |||||| |
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|
| T |
39231691 |
tatatatcaaatattacttacacatgaatagaagacaaacgg |
39231650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 37873897 - 37873797
Alignment:
| Q |
159 |
tatatatcaaatattaattacatatgaatagaa-gataaacgggtaataagatgcactattggacttttttcgatggcaaaatcaatccttttaaacaca |
257 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||| || |||||||||| ||| ||||| | | | ||||| ||| |||||||||||||| ||||||||| |
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|
| T |
37873897 |
tatatatcaatgattaaatacacatgaatagaaagacaaacgggtaacaagttgcaccgctaggccttttttgatagcaaaatcaatcctcttaaacaca |
37873798 |
T |
|
| Q |
258 |
a |
258 |
Q |
| |
|
| |
|
|
| T |
37873797 |
a |
37873797 |
T |
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