View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11532_high_12 (Length: 256)
Name: NF11532_high_12
Description: NF11532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11532_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 39280935 - 39280706
Alignment:
| Q |
19 |
gttcaatcaatcccaaacatttctctgttgccccagttttacagagagccttaataaggccattataagtaatattatcaaggggacaccctctaaatcg |
118 |
Q |
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| T |
39280935 |
gttcaatcaatcccaaacatttctctgttgccccagttttacagagagccttaataaggccattataagtaatattatcaaggggacaccctctaaatcg |
39280836 |
T |
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| Q |
119 |
catttcaccaacaagcttatctacttgttgaattaactctagcctaagaaatgcatgaatcagcgtattgtatgttacagtgttagcgataacaccctcc |
218 |
Q |
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| T |
39280835 |
catttcaccaacaagcttatctgcttgttgaatcaactctagccttagaaatgcatgaatcagcgtattgtatgttacagtgttagcgataacaccctcc |
39280736 |
T |
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| Q |
219 |
aagagcatgtcacgatacaaaccctatgct |
248 |
Q |
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| T |
39280735 |
aagagcatgtcacgatacaaacccaatgct |
39280706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 17349271 - 17349492
Alignment:
| Q |
21 |
tcaatcaatcccaaacatttctctgttgccccagttttacagagagccttaataaggccattataagtaatattatcaaggggacaccctctaaatcgca |
120 |
Q |
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| T |
17349271 |
tcaatcaatcccaaacctttctctattgccccagttttacagagagctttaataaggccattataagtaatattatcaaggggaaaccctcgaaatagca |
17349370 |
T |
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| Q |
121 |
tttcaccaacaagcttatctacttgttgaattaactctagcctaagaaatgcatgaatcagcgtattgtatgttacagtgttagcgataacaccctccaa |
220 |
Q |
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| T |
17349371 |
tttcattaacaagcttatacgcttgttgaatcgaatctcccctaagaaatgcgtgaattaacgtattgtatgttatagtgttagcaataacaccctccaa |
17349470 |
T |
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| Q |
221 |
gagcatgtcacgatacaaaccc |
242 |
Q |
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| T |
17349471 |
gaacatgtcatgatacaaaccc |
17349492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 51 - 242
Target Start/End: Original strand, 17349526 - 17349717
Alignment:
| Q |
51 |
ccagttttacagagagccttaataaggccattataagtaatattatcaaggggacaccctctaaatcgcatttcaccaacaagcttatctacttgttgaa |
150 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||| ||||||||| |
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| T |
17349526 |
ccagttttacagagagctttaataaggccattataagtaatattatcaaggggaaaccctcgaaatagcatttcattaacaagcttatacgcttgttgaa |
17349625 |
T |
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| Q |
151 |
ttaactctagcctaagaaatgcatgaatcagcgtattgtatgttacagtgttagcgataacaccctccaagagcatgtcacgatacaaaccc |
242 |
Q |
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| T |
17349626 |
tcgaatctcccctaagaaatgcgtgaattaacgtattgtatgttatagtgttagcaataacaccctccaagaacatgtcatgatacaaaccc |
17349717 |
T |
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