View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11532_high_4 (Length: 424)
Name: NF11532_high_4
Description: NF11532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11532_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 22 - 406
Target Start/End: Original strand, 41989690 - 41990067
Alignment:
| Q |
22 |
tgtggctcaaatgccactagtagtaataaccaatgttcttaaattatgaccgaatcaaccgggttaaccatttgaactagaaaccggtcagtttatcggt |
121 |
Q |
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| T |
41989690 |
tgtggctcaaaggccactagtagtaataaccaatgttcttaaattatgaccgaatcaaccgggttaaccatttgaactagaaaccggtcagtttatcggt |
41989789 |
T |
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| Q |
122 |
tgattcaatcttgtttgaagcttaatctaattgaattgaggttgcttttatatatattttttattagtcatttggttc--------ttgaacccgcttgg |
213 |
Q |
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| T |
41989790 |
tgattcgatcttgtttgaagcttaatctaattgaattgaggttgcttatatata---tttttattaatcatttggttcaatcgcagttgaacccgtttgg |
41989886 |
T |
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| Q |
214 |
ttgaattatgatttgaagatctcgtcggttcagtatttaatccaatttttagaacatcacatacaacattaaaatgacagaagtgcaatctatacactct |
313 |
Q |
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| T |
41989887 |
ttgaattatgatttgaagatctcgtcgattcagta------------tttagaacatcacatacaacattaaaatgacagaattgcaaactatacactct |
41989974 |
T |
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| Q |
314 |
ttcgctctcttttttaaatacttatgactatgttattgctcattagttgaaatttatactgttgtcacaatttaaaaaatggatagtgtataa |
406 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41989975 |
ttcactctcttttttaaatacttatgactatgttattgctcattagttgaaatttatactgttgtcacaatttaaaaaatggatagtgtataa |
41990067 |
T |
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