View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11532_high_9 (Length: 291)
Name: NF11532_high_9
Description: NF11532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11532_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 55573040 - 55572789
Alignment:
| Q |
11 |
cataggctccaacgatgaaaattgaaaagcatgtatcaaaatgattcatttatgaattcaaacaagacctttttatatttatggaaccatgtcatgcaat |
110 |
Q |
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| T |
55573040 |
cataggctccaacgatgaaaattgaaaagcatgtatcaaaatgattcatttatgaattcaaacaagacctttttatctttatggaaccatgtcatgcaat |
55572941 |
T |
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| Q |
111 |
ttatgacacttggttcatcaaagttgtgaaagataaaaaccattacagcacataacaactagagagacagaaaggaacgtaaaaggatgatgaaatttca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55572940 |
ttatgacacttggttcatcaaagttgtgaaagataaaaaccattacagcacataacaactagagagacagaaaggaacgtaaaaggatgatgaaatttca |
55572841 |
T |
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| Q |
211 |
ttgtataaagaaaatagaaacaaaatgaaggggagtttcatgaaaatatgtg |
262 |
Q |
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| T |
55572840 |
ttgtataaagaaaatagaaacaaaatgaaggggagtttcatgaaaatatgtg |
55572789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 33035506 - 33035433
Alignment:
| Q |
11 |
cataggctccaacgatgaaaattgaaaagcatgtatcaaaatgattcatttatgaattcaaacaagaccttttt |
84 |
Q |
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|||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33035506 |
cataggctcctacgaccaaaattgaagagcatgtatcaaaatgattcatttatgaattcaaacaagaccctttt |
33035433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 12080759 - 12080703
Alignment:
| Q |
28 |
aaaattgaaaagcatgtatcaaaatgattcatttatgaattcaaacaagaccttttt |
84 |
Q |
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||||||||| |||||||||||| |||||||||||||||||||||| |||||| |||| |
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| T |
12080759 |
aaaattgaagagcatgtatcaagatgattcatttatgaattcaaaaaagaccctttt |
12080703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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