View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11532_low_1 (Length: 559)

Name: NF11532_low_1
Description: NF11532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11532_low_1
NF11532_low_1
[»] chr7 (7 HSPs)
chr7 (345-546)||(1288754-1288955)
chr7 (81-338)||(1288037-1288275)
chr7 (456-540)||(1288937-1289021)
chr7 (374-526)||(6897981-6898132)
chr7 (356-468)||(29477817-29477932)
chr7 (396-477)||(4579965-4580047)
chr7 (391-526)||(25831949-25832084)
[»] chr4 (9 HSPs)
chr4 (345-526)||(15020017-15020200)
chr4 (345-526)||(55081250-55081433)
chr4 (373-526)||(16595547-16595700)
chr4 (345-526)||(20513470-20513653)
chr4 (357-478)||(40684423-40684547)
chr4 (363-477)||(39991498-39991613)
chr4 (429-526)||(33722558-33722655)
chr4 (429-477)||(8536705-8536754)
chr4 (357-477)||(2574898-2575021)
[»] chr1 (9 HSPs)
chr1 (380-522)||(2493407-2493549)
chr1 (345-523)||(19309158-19309337)
chr1 (345-528)||(31064317-31064502)
chr1 (373-526)||(23191600-23191753)
chr1 (345-526)||(27761389-27761571)
chr1 (391-526)||(28857659-28857794)
chr1 (345-456)||(12906574-12906688)
chr1 (373-515)||(24159399-24159541)
chr1 (345-410)||(36725187-36725254)
[»] chr6 (9 HSPs)
chr6 (345-526)||(32814619-32814802)
chr6 (345-526)||(14042007-14042190)
chr6 (347-526)||(35129990-35130170)
chr6 (345-411)||(28969592-28969660)
chr6 (443-526)||(5496230-5496312)
chr6 (396-477)||(22610012-22610094)
chr6 (371-468)||(32551077-32551175)
chr6 (436-476)||(8748227-8748267)
chr6 (396-475)||(17914056-17914136)
[»] chr8 (9 HSPs)
chr8 (374-526)||(2470339-2470491)
chr8 (345-526)||(19950182-19950365)
chr8 (345-526)||(19954636-19954819)
chr8 (418-475)||(21416377-21416435)
chr8 (451-526)||(4543950-4544024)
chr8 (374-411)||(34517677-34517714)
chr8 (375-509)||(29793081-29793214)
chr8 (437-477)||(31449476-31449516)
chr8 (396-476)||(43302253-43302336)
[»] chr3 (5 HSPs)
chr3 (380-525)||(4662529-4662674)
chr3 (345-410)||(48435435-48435500)
chr3 (396-477)||(8888373-8888455)
chr3 (398-471)||(35456510-35456584)
chr3 (380-437)||(29067681-29067738)
[»] chr5 (7 HSPs)
chr5 (345-526)||(18265054-18265236)
chr5 (436-477)||(6155022-6155063)
chr5 (443-476)||(1429724-1429757)
chr5 (345-411)||(16747778-16747846)
chr5 (436-477)||(32461156-32461197)
chr5 (429-468)||(13290886-13290926)
chr5 (426-477)||(16639150-16639202)
[»] chr2 (3 HSPs)
chr2 (396-477)||(13291079-13291161)
chr2 (443-526)||(14104954-14105036)
chr2 (374-468)||(41558643-41558738)
[»] scaffold0018 (1 HSPs)
scaffold0018 (437-525)||(171358-171444)
[»] scaffold0555 (1 HSPs)
scaffold0555 (346-410)||(4756-4822)
[»] scaffold0009 (1 HSPs)
scaffold0009 (346-422)||(148757-148835)
[»] scaffold0182 (1 HSPs)
scaffold0182 (396-477)||(9450-9532)
[»] scaffold0226 (1 HSPs)
scaffold0226 (345-474)||(5811-5943)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 345 - 546
Target Start/End: Original strand, 1288754 - 1288955
Alignment:
Q  345 gtgttgacaaactattcatttcttctccctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtccttcaga 444  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1288754 gtgttgacaaactattcatttcttctccctttttatatcccgtcgtatttaaagagtgttcttaagaacttagtcccttcgagatataatgtccttcaga 1288853  T
Q  445 attaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtccttcttaagagcatagtcc 544  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1288854 attaataatggtcttaagagcataatcccttcagcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtccttcttaagagcatagtcc 1288953  T
Q  545 ct 546  Q
    ||    
T  1288954 ct 1288955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 81 - 338
Target Start/End: Original strand, 1288037 - 1288275
Alignment:
Q  81 atttatatatcgtttggaattcattccaactaatcaattattctgggagccagttgatgatgcaaccctattaacatcgttatggagggttatccttata 180  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1288037 atttatatatcgtttggaattcattccaactaatcaatgattctgggagccagttgatgatgcaaccctattaacatcgttatggagggttatccttata 1288136  T
Q  181 cgtggtggaggagaaaatgggcagatagagaagttgagcagagattggatagaacgacggtcatggacagatggctctgttcgaacaccaagtgtgtttg 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||| ||||||||||||||||||    
T  1288137 cgtggtggaggagaaaatgggcagatagagaagttgagcagagattggatagaacgacg-------------------gttggaacaccaagtgtgtttg 1288217  T
Q  281 tgtgaattgaaaaattactatgtcccatatcaggtagattatacacacaatattagtg 338  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  1288218 tgtgaattgaaaaattattatgtcccatatccggtagattatacacacaatattagtg 1288275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 456 - 540
Target Start/End: Original strand, 1288937 - 1289021
Alignment:
Q  456 tcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtccttcttaagagcata 540  Q
    ||||||||||||| ||||||||  |||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||    
T  1288937 tcttaagagcatagtcccttcgctaaaactttgtcccttcgaaaataagagtatttttaaaattagagtccttcttaagagcata 1289021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 374 - 526
Target Start/End: Original strand, 6897981 - 6898132
Alignment:
Q  374 tttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtc-cttcagaattaataatggtcttaagagcataatcc 472  Q
    ||||| |||||| ||| ||||||||||||||||||||  | || ||||||||   || |||||| |||| ||||||| ||||||||||||| |||| |||    
T  6897981 tttttctgtcccttcgaatttaaagagtgttcttaaggtcatagtcccttcggttta-aatgtctcttcggaattaagaatggtcttaagaacatagtcc 6898079  T
Q  473 cttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 526  Q
    |||||| |||| || || |||| | ||||||||||||| |||| ||||||||||    
T  6898080 cttcggtaaaa-ttcgttccttcataaataagagtattcttaagatcatagtcc 6898132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 468
Target Start/End: Original strand, 29477817 - 29477932
Alignment:
Q  356 ctattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataa 452  Q
    |||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||  | ||||||||||    |||||| | ||||| ||||||| ||    
T  29477817 ctattcttttcttctccctccttttctgtcccttcggatttaaagagtgttcttaaggtcataatcccttcagtttataatatcccttcggaattaagaa 29477916  T
Q  453 tggtcttaagagcata 468  Q
    ||||||||||| ||||    
T  29477917 tggtcttaagaacata 29477932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 477
Target Start/End: Complemental strand, 4580047 - 4579965
Alignment:
Q  396 aagagtgttcttaagaacttaatcccttcgagatataatgtcctt-cagaattaataatggtcttaagagcataatcccttcg 477  Q
    |||||||||||||||| | |||||||||   | ||||||||| || ||||||||| |||||| ||||||||||| ||||||||    
T  4580047 aagagtgttcttaagaccataatcccttttcggtataatgtcatttcagaattaagaatggttttaagagcatagtcccttcg 4579965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 526
Target Start/End: Original strand, 25831949 - 25832084
Alignment:
Q  391 atttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaagagcataatcccttcggcaaaactttgt 489  Q
    |||||||||||||||||| || | ||  || || |||| ||||||| ||||  ||||||| ||||||||||| | |||| || |||| | |||  |||||    
T  25831949 atttaaagagtgttcttatgaccatagcccatttgagaaataatgttcctttggaattaagaatggtcttaaaaacatagtcacttcagtaaat-tttgt 25832047  T
Q  490 ccctttaaaaataagagtatttttaaaatcatagtcc 526  Q
    |||||  |||||||||||||| |||| ||||||||||    
T  25832048 cccttcgaaaataagagtattcttaagatcatagtcc 25832084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 345 - 526
Target Start/End: Original strand, 15020017 - 15020200
Alignment:
Q  345 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 441  Q
    |||||||||| |||||| |||||||| |||  |||| |||||||||| |||| |||| ||||||||||| | || |||||| |||||||||||||| |||    
T  15020017 gtgttgacaagctattcttttcttcttcctctttttctgtcccgtcggatttcaagaatgttcttaagaccatagtccctttgagatataatgtccattc 15020116  T
Q  442 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 526  Q
    | ||||||  ||||||||||||||||| |||||||||  ||| |||||||||||  |||||||||||||||||| ||||||||||    
T  15020117 aaaattaaggatggtcttaagagcatagtcccttcgg-taaattttgtccctttggaaataagagtatttttaagatcatagtcc 15020200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 345 - 526
Target Start/End: Original strand, 55081250 - 55081433
Alignment:
Q  345 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtc-cttc 441  Q
    |||||||| | |||||| |||| |||||||  |||| |||||| ||| ||||||||||||||||||||  | || ||||||||   ||||| ||| ||||    
T  55081250 gtgttgacgagctattcttttcctctccctctttttctgtcccttcgaatttaaagagtgttcttaaggccatagtcccttcggtttataacgtctcttc 55081349  T
Q  442 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 526  Q
    |||||||| ||||||||||||| |||| ||||||||| |||| || ||||||| | ||||||||||||| |||| ||||||||||    
T  55081350 agaattaagaatggtcttaagaacatagtcccttcgggaaaa-ttcgtcccttcagaaataagagtattcttaagatcatagtcc 55081433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 373 - 526
Target Start/End: Original strand, 16595547 - 16595700
Alignment:
Q  373 ctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatc 471  Q
    |||||| |||||| ||| ||||||||||||||||||||  | || ||  || |   || ||||||| ||||||||||| ||||||||||||| |||| ||    
T  16595547 ctttttttgtcccttcgaatttaaagagtgttcttaaggccatagtctatttggtttaaaatgtcccttcagaattaagaatggtcttaagaacatagtc 16595646  T
Q  472 ccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 526  Q
    |||| || |||| |||||||||| | |||||||||||||||||| ||||||||||    
T  16595647 ccttaggtaaaa-tttgtcccttcagaaataagagtatttttaagatcatagtcc 16595700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 345 - 526
Target Start/End: Complemental strand, 20513653 - 20513470
Alignment:
Q  345 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 441  Q
    |||||||| | |||||| ||||||||||||  |||| |||||  ||| ||||||||| || |||||| ||| |||||||||||   || ||||||| |||    
T  20513653 gtgttgacgagctattcttttcttctccctctttttctgtcctttcggatttaaagaatggtcttaaaaacataatcccttcggtttaaaatgtcccttc 20513554  T
Q  442 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 526  Q
      |||||| |||||| |||||| |||| ||||||||| |||| || ||| ||| | ||||||||||||| |||| ||||||||||    
T  20513553 gaaattaagaatggttttaagaacatagtcccttcggtaaaa-ttcgtctcttcagaaataagagtattcttaagatcatagtcc 20513470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 478
Target Start/End: Original strand, 40684423 - 40684547
Alignment:
Q  357 tattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataat 453  Q
    ||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||  | || ||| ||||   |||||||| |||| |||||||| |||    
T  40684423 tattcttttcttctccctgtttttctgtcccttcggatttaaagagtgttcttaaggtcatagtccattcggtttataatgtccctttagaattaagaat 40684522  T
Q  454 ggtcttaagagcataatcccttcgg 478  Q
    |||||||||| |||| ||| |||||    
T  40684523 ggtcttaagaacatagtccattcgg 40684547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 477
Target Start/End: Original strand, 39991498 - 39991613
Alignment:
Q  363 tttcttctccctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaa 461  Q
    ||||| |||||||||||| | || ||| |||||||||||||| |||||| |  | ||| |||| |||||||| | |||||  || ||| |||||||||||    
T  39991498 tttctcctccctttttatcttccatcggatttaaagagtgtttttaagaccacagtccattcgtgatataatctcccttcgaaagtaagaatggtcttaa 39991597  T
Q  462 gagcataatcccttcg 477  Q
    ||||||| || |||||    
T  39991598 gagcatagtctcttcg 39991613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 526
Target Start/End: Original strand, 33722558 - 33722655
Alignment:
Q  429 tataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 526  Q
    |||||||||| ||| ||||||| ||||||||||||| |||| ||| |||||  ||| |||||| |||  |||||||||||||| |||| |||| |||||    
T  33722558 tataatgtcccttcggaattaagaatggtcttaagaacatagtccattcgg-taaattttgtcgcttcgaaaataagagtattcttaagatcaaagtcc 33722655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 477
Target Start/End: Complemental strand, 8536754 - 8536705
Alignment:
Q  429 tataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcg 477  Q
    |||||||||| ||||||||||| |||||| |||||||||||||| |||||    
T  8536754 tataatgtccattcagaattaagaatggttttaagagcataatctcttcg 8536705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 357 - 477
Target Start/End: Original strand, 2574898 - 2575021
Alignment:
Q  357 tattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataat 453  Q
    ||||| ||||||||||||  |||| | |||||||| ||| | ||| |||||||||||   ||||| |||  ||| | ||||||| |||| || ||| |||    
T  2574898 tattcttttcttctccctctttttctatcccgtcggattcagagaatgttcttaagactataatctctttaagaaacaatgtcccttcaaaactaagaat 2574997  T
Q  454 ggtcttaagagcataatcccttcg 477  Q
    ||||||||||||||| ||||||||    
T  2574998 ggtcttaagagcatagtcccttcg 2575021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 380 - 522
Target Start/End: Original strand, 2493407 - 2493549
Alignment:
Q  380 tgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcgg 478  Q
    |||||||| | ||||||||| |||| |||||| | || ||||||||||| ||||||||| ||| ||||||| |||||||||||||||||| |||||||||    
T  2493407 tgtcccgtaggatttaaagaatgtttttaagaccatagtcccttcgagaaataatgtcccttcggaattaagaatggtcttaagagcatagtcccttcgg 2493506  T
Q  479 caaaactttgtccctttaaaaataagagtatttttaaaatcata 522  Q
      ||| ||||||||||  |||||||||||||| |||| ||||||    
T  2493507 -taaattttgtcccttcgaaaataagagtattcttaagatcata 2493549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 523
Target Start/End: Original strand, 19309158 - 19309337
Alignment:
Q  345 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 441  Q
    |||||||| | |||||| ||||||||||||  |||| || ||| ||| ||||||||||||||||||||  | || || |||||   |||||||||| |||    
T  19309158 gtgttgacgagctattcttttcttctccctctttttctgacccttcggatttaaagagtgttcttaaggtcatagtctcttcggtttataatgtcccttc 19309257  T
Q  442 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatag 523  Q
     ||||||||||||||||||||| |||| ||||||| | |||  ||| ||| ||| |||||||||||||| |||| |||||||    
T  19309258 ggaattaataatggtcttaagaacatagtcccttcagtaaa--tttttccattttaaaataagagtattattaagatcatag 19309337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 528
Target Start/End: Complemental strand, 31064502 - 31064317
Alignment:
Q  345 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 441  Q
    |||||||| |||||||| ||| ||||||||  ||||||||||| ||| ||||||||||||||||||||| | || || ||| |   || ||||| |||||    
T  31064502 gtgttgacgaactattcttttattctccctctttttatgtcccttcggatttaaagagtgttcttaagatcatagtctctttggtttaaaatgtcccttc 31064403  T
Q  442 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcctt 528  Q
     ||||| | ||||||||||||| |||| ||||||||| |||| || |||||||   |||||||| |||| |||| ||||||||||||    
T  31064402 ggaattgagaatggtcttaagaacatagtcccttcggtaaaa-ttagtcccttctgaaataagactattcttaagatcatagtcctt 31064317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 526
Target Start/End: Original strand, 23191600 - 23191753
Alignment:
Q  373 ctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatc 471  Q
    |||||| |||| ||||| ||||||||||| || |||||| | |  ||||||| ||| ||||||||| ||| ||||||| ||| |||| || | |||| ||    
T  23191600 ctttttctgtctcgtcggatttaaagagtttttttaagaccatggtcccttcaagaaataatgtcccttcggaattaagaatagtctcaatatcatagtc 23191699  T
Q  472 ccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 526  Q
     |||||| |||  |||||||||||||||||||||||||| |||| ||||||||||    
T  23191700 tcttcggtaaat-tttgtccctttaaaaataagagtattcttaagatcatagtcc 23191753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 345 - 526
Target Start/End: Original strand, 27761389 - 27761571
Alignment:
Q  345 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 441  Q
    |||||||| | |||||| |||| |||||||  |||| |||||| ||| ||||||||||||||||||||  | || |||||| |   || ||||| |||||    
T  27761389 gtgttgacgagctattcttttcctctccctctttttctgtcccttcgaatttaaagagtgttcttaaggccatagtccctttggtttaaaatgtcccttc 27761488  T
Q  442 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 526  Q
    |||| ||| |||||||||||||  ||| ||||||||| |||| || ||||||| |||||||||||| || |||| ||||||||||    
T  27761489 agaa-taagaatggtcttaagaaaatagtcccttcggtaaaa-ttcgtcccttcaaaaataagagtgttcttaagatcatagtcc 27761571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 526
Target Start/End: Original strand, 28857659 - 28857794
Alignment:
Q  391 atttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcggcaaaactttgt 489  Q
    |||||| |||||||||| ||  |||| ||| ||||   || ||||||| ||||||||||| ||||||||||||| |||| ||||||||| |||| || ||    
T  28857659 atttaatgagtgttcttcaggtcttagtcctttcggtttaaaatgtccattcagaattaagaatggtcttaagaacatagtcccttcggtaaaa-ttcgt 28857757  T
Q  490 ccctttaaaaataagagtatttttaaaatcatagtcc 526  Q
    ||||| | ||||||||||||| |||| ||||||||||    
T  28857758 cccttcagaaataagagtattcttaagatcatagtcc 28857794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 456
Target Start/End: Complemental strand, 12906688 - 12906574
Alignment:
Q  345 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 441  Q
    |||||||| | |||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||  | || ||||||||   |||||||| |||||    
T  12906688 gtgttgacgagctattcttttcttctccctctttttctgtcccttcggatttaaagagtgttcttaaggccatagtcccttcggtttataatgtcccttc 12906589  T
Q  442 agaattaataatggt 456  Q
     ||||||| ||||||    
T  12906588 ggaattaagaatggt 12906574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 515
Target Start/End: Original strand, 24159399 - 24159541
Alignment:
Q  373 ctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaagagcataatc 471  Q
    |||||| |||||| ||  |||||||| |||||||||||  | || ||||||||   || ||||| ||||| ||||||| || |||||||||| |||| ||    
T  24159399 ctttttctgtcccttcagatttaaagggtgttcttaaggccatagtcccttcggtttaaaatgtcccttcggaattaagaacggtcttaagaacatagtc 24159498  T
Q  472 ccttcggcaaaactttgtccctttaaaaataagagtatttttaa 515  Q
    ||||||| |||| || ||||||| | ||||||||||||| ||||    
T  24159499 ccttcggtaaaa-ttcgtcccttcagaaataagagtattcttaa 24159541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 410
Target Start/End: Complemental strand, 36725254 - 36725187
Alignment:
Q  345 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaag 410  Q
    |||||||| | |||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||    
T  36725254 gtgttgacgagctattcttttcttctccctctttttctgtcccttcggatttaaagagtgttcttaag 36725187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 345 - 526
Target Start/End: Original strand, 32814619 - 32814802
Alignment:
Q  345 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 441  Q
    |||||||| | |||||| |||| |||||||  ||||||||||||||  ||||||||||||||||||||| | || ||||||| ||| ||||| | |||||    
T  32814619 gtgttgacgagctattcttttcctctccctctttttatgtcccgtcaaatttaaagagtgttcttaagaccatagtcccttcaagaaataatttcccttc 32814718  T
Q  442 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 526  Q
    |||||||| ||| |||| |||||| || |||||||||  ||| ||||||||||  ||||||||  |||| |||| ||||||||||    
T  32814719 agaattaagaatagtctcaagagcttagtcccttcgg-taaattttgtcccttcgaaaataagtttattcttaatatcatagtcc 32814802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 345 - 526
Target Start/End: Complemental strand, 14042190 - 14042007
Alignment:
Q  345 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 441  Q
    |||||||| | |||||| ||||||||||||  |||| |||||| ||| |||||||| ||||||| |||  | || ||||||||   |||||||||| |||    
T  14042190 gtgttgacgagctattcttttcttctccctctttttctgtcccttcggatttaaagtgtgttctaaaggccatagtcccttcggtttataatgtcccttc 14042091  T
Q  442 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 526  Q
      |||||| ||||||||||||| |||| | ||||||| |||  ||||||||||  |||||||||||||| |||| |||| |||||    
T  14042090 gaaattaagaatggtcttaagaacatagttccttcggtaaat-tttgtcccttcgaaaataagagtattcttaagatcaaagtcc 14042007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 347 - 526
Target Start/End: Complemental strand, 35130170 - 35129990
Alignment:
Q  347 gttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcag 443  Q
    |||||||| |||||| |||| |||||||  |||| |||||| ||| ||||||||| ||||||||||  | || ||||||||   |||||||||| ||| |    
T  35130170 gttgacaatctattcttttcctctccctctttttctgtcccttcggatttaaagaatgttcttaaggtcatagtcccttcggtttataatgtccattcgg 35130071  T
Q  444 aattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 526  Q
    |||||| ||||||||||||| |||| || ||||||  ||| ||||| ||||  |||||||||||||| |||| |||| |||||    
T  35130070 aattaagaatggtcttaagaacatagtctcttcgg-taaattttgt-ccttcgaaaataagagtattcttaagatcaaagtcc 35129990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 411
Target Start/End: Original strand, 28969592 - 28969660
Alignment:
Q  345 gtgttgacaaactattcatttcttctcccttttt--atgtcccgtcgtatttaaagagtgttcttaaga 411  Q
    |||||||| | |||||| |||||||||||| |||  ||||||||||| |||| ||||||||||||||||    
T  28969592 gtgttgacgagctattcttttcttctccctcttttcatgtcccgtcggattttaagagtgttcttaaga 28969660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 526
Target Start/End: Complemental strand, 5496312 - 5496230
Alignment:
Q  443 gaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 526  Q
    ||||||| |||||||||||||||||| | |||||||  ||| ||| ||||||  ||||| |||||||| |||| ||||||||||    
T  5496312 gaattaaaaatggtcttaagagcatagttccttcgg-taaattttatcccttcgaaaattagagtattattaagatcatagtcc 5496230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 477
Target Start/End: Complemental strand, 22610094 - 22610012
Alignment:
Q  396 aagagtgttcttaagaacttaatcccttcgagatataatgtc-cttcagaattaataatggtcttaagagcataatcccttcg 477  Q
    |||||||||||||||| | |||||||||   | ||||||||| |||| ||||||| |||||| ||||||||||| || |||||    
T  22610094 aagagtgttcttaagaccataatcccttttcggtataatgtcacttcggaattaagaatggttttaagagcatagtctcttcg 22610012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 468
Target Start/End: Original strand, 32551077 - 32551175
Alignment:
Q  371 ccctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcata 468  Q
    |||||||||| || ||||  ||||| |||||||||||||||   || | |||||||| ||||||||||  ||| |||||||||| ||||||||| ||||    
T  32551077 ccctttttatttctcgtcagatttatagagtgttcttaagactatagttccttcgagttataatgtccgatcaaaattaataatagtcttaagaacata 32551175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 476
Target Start/End: Complemental strand, 8748267 - 8748227
Alignment:
Q  436 tccttcagaattaataatggtcttaagagcataatcccttc 476  Q
    ||||||| ||| ||||||||||||||||||||| |||||||    
T  8748267 tccttcacaatcaataatggtcttaagagcatagtcccttc 8748227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 475
Target Start/End: Complemental strand, 17914136 - 17914056
Alignment:
Q  396 aagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatccctt 475  Q
    |||||||||||||||| | || ||| ||   |||||||||||| ||| ||||||| |||||||||||| ||||| ||||||    
T  17914136 aagagtgttcttaagaccatagtccattttcgatataatgtcccttcggaattaagaatggtcttaagtgcatagtccctt 17914056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 374 - 526
Target Start/End: Complemental strand, 2470491 - 2470339
Alignment:
Q  374 tttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaagagcataatcc 472  Q
    ||||| |||||| ||| ||||||||||||||||||||  | || |||||||    || ||||| ||||| ||||||| ||||||||||||| ||||  ||    
T  2470491 tttttctgtcccttcggatttaaagagtgttcttaaggtcatagtcccttcagtttaaaatgtcccttctgaattaagaatggtcttaagaacatagccc 2470392  T
Q  473 cttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 526  Q
    |||||| |||| || ||||||| |||||||||||||||||||| ||||||||||    
T  2470391 cttcggtaaaa-ttcgtcccttcaaaaataagagtatttttaagatcatagtcc 2470339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 526
Target Start/End: Complemental strand, 19950365 - 19950182
Alignment:
Q  345 gtgttgacaaactattcatttcttctccctttttat--gtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 441  Q
    |||||||| | |||||| |||| ||||||| ||| |  ||||| ||| ||||||||||||||||||||  | || ||||||||   || ||||||| |||    
T  19950365 gtgttgacgagctattcttttcctctccctctttttccgtcccttcggatttaaagagtgttcttaaggtcatagtcccttcggtttaaaatgtccattc 19950266  T
Q  442 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 526  Q
     |||| || ||||||||||||| |||| ||||||||| |||| |||||||| | | ||||||||||||| |||| ||||||||||    
T  19950265 ggaataaagaatggtcttaagaacatagtcccttcggtaaaa-tttgtcccatcagaaataagagtattcttaagatcatagtcc 19950182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 345 - 526
Target Start/End: Complemental strand, 19954819 - 19954636
Alignment:
Q  345 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 441  Q
    |||||||| | |||||| |||| |||||||  |||| | |||| ||| ||||||||||||||||||||  | || || |||||   || ||||| |||||    
T  19954819 gtgttgacgagctattcttttcctctccctctttttctctcccttcggatttaaagagtgttcttaaggccatagtctcttcggtttaaaatgtcccttc 19954720  T
Q  442 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 526  Q
     |||| || ||||||||||||| |||| ||||||||| |||| |||||||||| | ||||||||||||| |||| | ||||||||    
T  19954719 ggaataaagaatggtcttaagaacatagtcccttcggtaaaa-tttgtcccttcagaaataagagtattcttaagagcatagtcc 19954636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 21416377 - 21416435
Alignment:
Q  418 tcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatccctt 475  Q
    ||||||||||| ||||||||| || |||||||| ||||||||||| |||||||||||||    
T  21416377 tcccttcgagaaataatgtcccttgagaattaagaatggtcttaatagcataatccctt 21416435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 526
Target Start/End: Original strand, 4543950 - 4544024
Alignment:
Q  451 aatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 526  Q
    ||||||||||||| |||| ||||||||| |||| || ||||||| | |||||| |||||| |||| ||||||||||    
T  4543950 aatggtcttaagaacatagtcccttcggtaaaa-ttcgtcccttcagaaataaaagtattcttaagatcatagtcc 4544024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 411
Target Start/End: Complemental strand, 34517714 - 34517677
Alignment:
Q  374 tttttatgtcccgtcgtatttaaagagtgttcttaaga 411  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  34517714 tttttatgtcccgtcggatttaaagagtgtttttaaga 34517677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 509
Target Start/End: Complemental strand, 29793214 - 29793081
Alignment:
Q  375 ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatg-tccttcagaattaataatggtcttaagagcataatccc 473  Q
    |||| |||||| ||| |||||| ||| |  ||||||| | |||||||||||| |||||||| | ||||  |||||| |||| |||||||||| ||||| |    
T  29793214 ttttttgtcccttcgaatttaatgagcgaccttaagaccataatcccttcgaaatataatgtttcttcgaaattaagaatgatcttaagagcttaatctc 29793115  T
Q  474 ttcggcaaaactttgtccctttaaaaataagagtat 509  Q
    || |  | || |||||||||| |||| |||||||||    
T  29793114 tttg--ataattttgtcccttcaaaattaagagtat 29793081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 477
Target Start/End: Original strand, 31449476 - 31449516
Alignment:
Q  437 ccttcagaattaataatggtcttaagagcataatcccttcg 477  Q
    ||||| ||||||| |||||||||||||||||| ||||||||    
T  31449476 ccttcggaattaagaatggtcttaagagcatagtcccttcg 31449516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 476
Target Start/End: Original strand, 43302253 - 43302336
Alignment:
Q  396 aagagtgttcttaagaactta--atcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttc 476  Q
    |||||||||||||||| | ||  |||||||   |||||| ||||| ||| |||| ||||||||||||||||||||| |||||||    
T  43302253 aagagtgttcttaagaccatataatcccttgtcgatatattgtccattcggaatcaataatggtcttaagagcatagtcccttc 43302336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 380 - 525
Target Start/End: Complemental strand, 4662674 - 4662529
Alignment:
Q  380 tgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcgg 478  Q
    |||||| ||| ||||||||||||||||||||  | || ||||||||   || ||||||| ||| ||||||| ||||||||||||| |||| ||||||||     
T  4662674 tgtcccttcggatttaaagagtgttcttaaggccatagtcccttcggtttaaaatgtcccttcggaattaagaatggtcttaagaacatagtcccttcga 4662575  T
Q  479 caaaactttgtccctttaaaaataagagtatttttaaaatcatagtc 525  Q
     |||| || ||||||| ||||||||||||||| |||| |||||||||    
T  4662574 taaaa-ttcgtcccttaaaaaataagagtattcttaagatcatagtc 4662529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 410
Target Start/End: Original strand, 48435435 - 48435500
Alignment:
Q  345 gtgttgacaaactattcatttcttctccctttttatgtcccgtcgtatttaaagagtgttcttaag 410  Q
    |||||||||| |||||| |||| |||| ||||||||||||| ||  ||||||||||||||||||||    
T  48435435 gtgttgacaagctattcttttcctctctctttttatgtcccttcagatttaaagagtgttcttaag 48435500  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 477
Target Start/End: Complemental strand, 8888455 - 8888373
Alignment:
Q  396 aagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcg 477  Q
    |||||||||||||||| | || ||||||   | | |||||||| ||| ||||||| |||||||||||||||||| ||||||||    
T  8888455 aagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaagagcatagtcccttcg 8888373  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 35456510 - 35456584
Alignment:
Q  398 gagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatc 471  Q
    |||||||||||||| |||||| |||    | |||||||||| ||| ||||||| |||||||||||||||||||||    
T  35456510 gagtgttcttaagaccttaattcctattcggtataatgtcccttcggaattaagaatggtcttaagagcataatc 35456584  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 437
Target Start/End: Original strand, 29067681 - 29067738
Alignment:
Q  380 tgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtc 437  Q
    |||||||||| |||||||||||||| |||||| | || || ||||||| |||||||||    
T  29067681 tgtcccgtcgaatttaaagagtgtttttaagatcatagtcacttcgagttataatgtc 29067738  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 526
Target Start/End: Original strand, 18265054 - 18265236
Alignment:
Q  345 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatg-tccttc 441  Q
    |||||||| | |||||| |||| |||||||  |||| |||||| ||| ||||||||||||||||||||  | || ||||||||   || |||| ||||||    
T  18265054 gtgttgacgagctattcttttcctctccctctttttctgtcccttcggatttaaagagtgttcttaaggccctagtcccttcggtttaaaatgttccttc 18265153  T
Q  442 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 526  Q
     ||| ||| ||||||||||||| |||| ||||||||| |||| || ||||||| | ||||||||||||| |||| ||||||||||    
T  18265154 -gaaataagaatggtcttaagaacatagtcccttcggtaaaa-ttcgtcccttcagaaataagagtattcttaagatcatagtcc 18265236  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 436 - 477
Target Start/End: Original strand, 6155022 - 6155063
Alignment:
Q  436 tccttcagaattaataatggtcttaagagcataatcccttcg 477  Q
    ||||||||||| ||||||||||||||||||||| ||||||||    
T  6155022 tccttcagaatcaataatggtcttaagagcatagtcccttcg 6155063  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 476
Target Start/End: Original strand, 1429724 - 1429757
Alignment:
Q  443 gaattaataatggtcttaagagcataatcccttc 476  Q
    |||||||||||||||||||||||||| |||||||    
T  1429724 gaattaataatggtcttaagagcatagtcccttc 1429757  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 411
Target Start/End: Original strand, 16747778 - 16747846
Alignment:
Q  345 gtgttgacaaactattcatttcttctccc--tttttatgtcccgtcgtatttaaagagtgttcttaaga 411  Q
    |||||||| | ||||||||||||||||||  ||||||||| || ||| ||||||| | |||||||||||    
T  16747778 gtgttgacgagctattcatttcttctccctttttttatgttccatcggatttaaaaaatgttcttaaga 16747846  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 477
Target Start/End: Original strand, 32461156 - 32461197
Alignment:
Q  436 tccttcagaattaataatggtcttaagagcataatcccttcg 477  Q
    |||||| |||| ||||||||||||||||||||| ||||||||    
T  32461156 tccttcggaatcaataatggtcttaagagcatagtcccttcg 32461197  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 468
Target Start/End: Original strand, 13290886 - 13290926
Alignment:
Q  429 tataatgtcctt-cagaattaataatggtcttaagagcata 468  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  13290886 tataatgtcctttcagaattaaaaatggtcttaagagcata 13290926  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 477
Target Start/End: Original strand, 16639150 - 16639202
Alignment:
Q  426 agatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcg 477  Q
    ||||||||||||| || |||||||| |||| ||||||||||||| ||||||||    
T  16639150 agatataatgtccctttagaattaaaaatgatcttaagagcatagtcccttcg 16639202  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 396 - 477
Target Start/End: Original strand, 13291079 - 13291161
Alignment:
Q  396 aagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcg 477  Q
    |||||||||||||||| | ||  |||||| ||||||||||||| ||| ||||| | |||||||||||||| ||||||||||||    
T  13291079 aagagtgttcttaagatcatagacccttctagatataatgtcccttcggaattgacaatggtcttaagagtataatcccttcg 13291161  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 526
Target Start/End: Complemental strand, 14105036 - 14104954
Alignment:
Q  443 gaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 526  Q
    ||||||| ||||||||||||| |||| |||||||||  ||| || ||||||| | ||||||||||||| |||| ||||||||||    
T  14105036 gaattaagaatggtcttaagaacatagtcccttcgg-taaatttcgtcccttcagaaataagagtattcttaagatcatagtcc 14104954  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 468
Target Start/End: Original strand, 41558643 - 41558738
Alignment:
Q  374 tttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaagagcata 468  Q
    ||||| |||||||||| ||||||||||||||| || || | || |||||| |||| |||| || |||||| |||||| |||| |||||||||||||    
T  41558643 tttttttgtcccgtcggatttaaagagtgttcatatgaccatagtccctttgagaaataacgtcccttcaaaattaaaaatgttcttaagagcata 41558738  T

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Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 437 - 525
Target Start/End: Original strand, 171358 - 171444
Alignment:
Q  437 ccttcagaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtc 525  Q
    ||||| ||||||| ||||||||||||| | || ||||||||  |||  |||||||||| | |||||||||||||||||| |||||||||    
T  171358 ccttcggaattaagaatggtcttaagaacgtagtcccttcgataaa--tttgtcccttcagaaataagagtatttttaagatcatagtc 171444  T

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Target: scaffold0555 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 410
Target Start/End: Complemental strand, 4822 - 4756
Alignment:
Q  346 tgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaag 410  Q
    ||||||| | |||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||    
T  4822 tgttgacgagctattcttttcttctccctctttttttgtcccttcggatttaaagagtgttcttaag 4756  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 422
Target Start/End: Original strand, 148757 - 148835
Alignment:
Q  346 tgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatccct 422  Q
    |||||||||||||||| |||| ||| |||  |||| |||||||||| | || |||||||||||||||| | ||||||||    
T  148757 tgttgacaaactattcttttcctctacctctttttctgtcccgtcggactttaagagtgttcttaagaccataatccct 148835  T

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Target: scaffold0182 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 477
Target Start/End: Original strand, 9450 - 9532
Alignment:
Q  396 aagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcg 477  Q
    |||||||||||||||| | || ||||||   | | |||||||| ||| ||||||| |||||||||||||||||| ||||||||    
T  9450 aagagtgttcttaagaccatagtcccttttcggtttaatgtccattcggaattaagaatggtcttaagagcatagtcccttcg 9532  T

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Target: scaffold0226 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 474
Target Start/End: Original strand, 5811 - 5943
Alignment:
Q  345 gtgttgacaaactattcatttcttctccctttttat--gtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 441  Q
    |||||||| | |||||| ||| |||||||| ||| |  ||||| ||| |||||||||||||| |||||  | || ||||||||   |||||||||| |||    
T  5811 gtgttgacgagctattctttttttctccctcttttttagtcccttcggatttaaagagtgtttttaaggccatagtcccttcggtttataatgtcccttc 5910  T
Q  442 agaattaataatggtcttaagagcataatccct 474  Q
      |||||| ||||||||||||| |||| |||||    
T  5911 gaaattaagaatggtcttaagaacatagtccct 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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