View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11532_low_11 (Length: 286)

Name: NF11532_low_11
Description: NF11532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11532_low_11
NF11532_low_11
[»] chr8 (7 HSPs)
chr8 (18-280)||(7023278-7023540)
chr8 (38-280)||(7075344-7075586)
chr8 (36-280)||(7036376-7036620)
chr8 (36-280)||(7030667-7030911)
chr8 (45-154)||(7081406-7081515)
chr8 (39-142)||(7068845-7068948)
chr8 (39-142)||(7092786-7092889)
[»] chr4 (7 HSPs)
chr4 (111-147)||(3817514-3817550)
chr4 (111-147)||(3919914-3919950)
chr4 (111-147)||(3933138-3933174)
chr4 (114-147)||(3954577-3954610)
chr4 (114-147)||(4002220-4002253)
chr4 (111-147)||(3809934-3809970)
chr4 (114-142)||(4009917-4009945)
[»] chr5 (1 HSPs)
chr5 (114-142)||(13397871-13397899)


Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 7023540 - 7023278
Alignment:
Q  18 agtacttccctaactcccgtagttattatgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacat 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7023540 agtacttccgtaactcccgtagttattatgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacat 7023441  T
Q  118 catcaagaacaataagaaccttcatgcggcgaagccttttattaaataaaggttgtaattcatttatcagatcatcttttgtattttcttcctctaacag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7023440 catcaagaacaataagaaccttcatgcggcgaagccttttattaaataaaggttgtaattcatttatcagatcatctttcgtattttcttcctctaacag 7023341  T
Q  218 agtggataaaagcttttttcttaatgacaaattgtttgtgccagatctttctgattcttctct 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7023340 agtggataaaagcttttttcttaatgacaaattgtttgtgccagatctttctgattcttctct 7023278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 38 - 280
Target Start/End: Original strand, 7075344 - 7075586
Alignment:
Q  38 agttattatgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaacc 137  Q
    |||||| ||||||| |||||||||||| |||||||||| |||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||    
T  7075344 agttatgatgattctacttcctggtcctaaccaatcaactgttccaaccaaaacttctagttgttccgcatctttgacatcatcaagaacaataagaacc 7075443  T
Q  138 ttcatgcggcgaagccttttattaaataaaggttgtaattcatttatcagatcatcttttgtattttcttcctctaacagagtggataaaagcttttttc 237  Q
    |||||||||| ||||||||| ||||  |||||| ||||| |||||||||  ||||||||   || ||| |||||||| ||||||||||||||||||||||    
T  7075444 ttcatgcggctaagccttttcttaaccaaaggtggtaatccatttatcatgtcatctttcaaatcttcatcctctaatagagtggataaaagcttttttc 7075543  T
Q  238 ttaatgacaaattgtttgtgccagatctttctgattcttctct 280  Q
    ||||   |||| ||||||||||| |||||||||||||||||||    
T  7075544 ttaacctcaaactgtttgtgccatatctttctgattcttctct 7075586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 36 - 280
Target Start/End: Complemental strand, 7036620 - 7036376
Alignment:
Q  36 gtagttattatgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaa 135  Q
    |||||||| ||||||| |||||||||||| |||||||||| | |||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  7036620 gtagttatgatgattctacttcctggtcctaaccaatcaactattccaatcaaaacttctagttgctctgcatctttaacatcatcaagaacaataagaa 7036521  T
Q  136 ccttcatgcggcgaagccttttattaaataaaggttgtaattcatttatcagatcatcttttgtattttcttcctctaacagagtggataaaagcttttt 235  Q
    ||||||||||||  |||||||| ||||  |||||  ||||| |||||||||  ||||||||   || |||||||||||| |||||||||||||| |||||    
T  7036520 ccttcatgcggcttagccttttcttaaccaaaggaggtaatccatttatcatgtcatctttcaaatcttcttcctctaatagagtggataaaagattttt 7036421  T
Q  236 tcttaatgacaaattgtttgtgccagatctttctgattcttctct 280  Q
    |||||    |||| ||||||| | | ||| |||||||||||||||    
T  7036420 tcttagcctcaaactgtttgttctacatccttctgattcttctct 7036376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 36 - 280
Target Start/End: Complemental strand, 7030911 - 7030667
Alignment:
Q  36 gtagttattatgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaa 135  Q
    |||||||| ||||||| ||||| |||||| |||||||||| |||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  7030911 gtagttatgatgattctacttcttggtcctaaccaatcaactgttccaatcaaaacttctagttgctctgcatctttgatatcgtcaagaacaataagaa 7030812  T
Q  136 ccttcatgcggcgaagccttttattaaataaaggttgtaattcatttatcagatcatcttttgtattttcttcctctaacagagtggataaaagcttttt 235  Q
    ||||||| ||| |||||||||| ||||  |||||  ||||  |||||||||| ||||||||   ||||||||||| ||| || ||||||||||   ||||    
T  7030811 ccttcatacggtgaagccttttcttaaccaaaggaggtaacccatttatcagttcatctttcaaattttcttcctttaatagggtggataaaataatttt 7030712  T
Q  236 tcttaatgacaaattgtttgtgccagatctttctgattcttctct 280  Q
    ||||||   |||| ||||||| ||| |||||||||||||||||||    
T  7030711 tcttaacctcaaactgtttgttccacatctttctgattcttctct 7030667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 7081406 - 7081515
Alignment:
Q  45 atgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaaccttcatgc 144  Q
    ||||||| ||| |||| |||||||||||||||||||||||  |||| ||||||||| | || ||| |||||||| |||||||||| |||||||||||| |    
T  7081406 atgattctactacctgttccaaaccaatcaagtgttccaattaaaatttctaattgttgtggatccttgacatcgtcaagaacaacaagaaccttcatac 7081505  T
Q  145 ggcgaagcct 154  Q
    | ||||||||    
T  7081506 gacgaagcct 7081515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 7068845 - 7068948
Alignment:
Q  39 gttattatgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaacct 138  Q
    ||||| ||||||| ||| |||  |||||||||||||||||||||||  ||||  |||| |||||||  |||  | ||||| |||||||||| ||||||||    
T  7068845 gttatgatgattctactaccttttccaaaccaatcaagtgttccaattaaaatatctagttgctcttgatcactcacatcgtcaagaacaacaagaacct 7068944  T
Q  139 tcat 142  Q
    ||||    
T  7068945 tcat 7068948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 7092786 - 7092889
Alignment:
Q  39 gttattatgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaacct 138  Q
    ||||| ||||||| |||  ||| ||| |||||||||||||||||||  |||  ||||| |||   || ||| |||||||| |||||||||||||||||||    
T  7092786 gttataatgattctactatctgttcctaaccaatcaagtgttccaattaaagtttctacttgtcgtgaatcattgacatcgtcaagaacaataagaacct 7092885  T
Q  139 tcat 142  Q
    ||||    
T  7092886 tcat 7092889  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 3817514 - 3817550
Alignment:
Q  111 ttgacatcatcaagaacaataagaaccttcatgcggc 147  Q
    ||||||||||||||||| |||||||||||||||||||    
T  3817514 ttgacatcatcaagaacgataagaaccttcatgcggc 3817550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 3919950 - 3919914
Alignment:
Q  111 ttgacatcatcaagaacaataagaaccttcatgcggc 147  Q
    ||||||||||||||||| |||||||||||||||||||    
T  3919950 ttgacatcatcaagaacgataagaaccttcatgcggc 3919914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 3933174 - 3933138
Alignment:
Q  111 ttgacatcatcaagaacaataagaaccttcatgcggc 147  Q
    |||||||||||||||||||||||||| ||||||||||    
T  3933174 ttgacatcatcaagaacaataagaactttcatgcggc 3933138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 147
Target Start/End: Complemental strand, 3954610 - 3954577
Alignment:
Q  114 acatcatcaagaacaataagaaccttcatgcggc 147  Q
    ||||||||||||||||||||||||||||| ||||    
T  3954610 acatcatcaagaacaataagaaccttcatacggc 3954577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 147
Target Start/End: Original strand, 4002220 - 4002253
Alignment:
Q  114 acatcatcaagaacaataagaaccttcatgcggc 147  Q
    ||||||||||||||||||||||||||||| ||||    
T  4002220 acatcatcaagaacaataagaaccttcatacggc 4002253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 3809934 - 3809970
Alignment:
Q  111 ttgacatcatcaagaacaataagaaccttcatgcggc 147  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  3809934 ttgacgtcatcaagaacgataagaaccttcatgcggc 3809970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 4009917 - 4009945
Alignment:
Q  114 acatcatcaagaacaataagaaccttcat 142  Q
    |||||||||||||||||||||||||||||    
T  4009917 acatcatcaagaacaataagaaccttcat 4009945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 13397871 - 13397899
Alignment:
Q  114 acatcatcaagaacaataagaaccttcat 142  Q
    |||||||||||||||||||||||||||||    
T  13397871 acatcatcaagaacaataagaaccttcat 13397899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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