View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11532_low_2 (Length: 459)

Name: NF11532_low_2
Description: NF11532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11532_low_2
NF11532_low_2
[»] chr2 (15 HSPs)
chr2 (18-378)||(2321590-2321972)
chr2 (21-198)||(2294278-2294464)
chr2 (357-449)||(2322015-2322107)
chr2 (20-172)||(2303890-2304046)
chr2 (218-338)||(2294512-2294633)
chr2 (18-77)||(2310606-2310665)
chr2 (218-288)||(2339306-2339375)
chr2 (22-76)||(2351468-2351522)
chr2 (22-77)||(2327447-2327502)
chr2 (360-449)||(2331566-2331653)
chr2 (218-255)||(2304241-2304278)
chr2 (218-290)||(2331412-2331484)
chr2 (96-201)||(2327562-2327664)
chr2 (418-449)||(2294657-2294688)
chr2 (18-58)||(2331158-2331198)
[»] chr8 (1 HSPs)
chr8 (22-62)||(41127477-41127517)


Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 2321590 - 2321972
Alignment:
Q  18 actatggtgatgaaaaatccattgcaagttcatatttctcctagggtatag---------gttatgtgtaacgatttggagtatgtaatgttgttgtgtg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||   |||    
T  2321590 actatggtgatgaaaaatccattgcaagttcatatttctcctagggtatagattatgtgtgttatgtgtaacgatttggagtatgtaatgttgt---gtg 2321686  T
Q  109 aaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtggatttctcatatggtgggattttgtttcatacaat------ 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||          
T  2321687 aaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtggatttctcatatggtcggattttgtttcatacaatgatccc 2321786  T
Q  203 --------acaatgatc--ccttacttcttatatatcttgtttcttgtataaaataaaacatgtctgtcattcttgtaagtcaagatactttcaatgtat 292  Q
            ||| | ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321787 ttatgcatacattcatatgccttacttcttatatatcttgtttcttgtataaaataaaacatgtctgtcattcttgtaagtcaagatactttcaatgtat 2321886  T
Q  293 aaaaaatatgatcttgtttttgtaatatcaaagttgttttattttggtcgactgaagaaaaagaagaaatgtatgtcctagctaaa 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321887 aaaaaatatgatcttgtttttgtaatatcaaagttgttttattttggtcgactgaagaaaaagaagaaatgtatgtcctagctaaa 2321972  T

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Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 2294278 - 2294464
Alignment:
Q  21 atggtgatgaaaaatccattgcaagttcatatttctcctagggtataggttatgtgt---------aacgatttggagtatgtaatgttgttgtgtgaac 111  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||         |||||| |||||||||||||||||||||||||||    
T  2294278 atggtgatgaaaaatccattgcaagttcatatttctcctaggatatagattatgtgtgttatatgtaacgatgtggagtatgtaatgttgttgtgtgaac 2294377  T
Q  112 cactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtggatttctcatatggtgggattttgtttcata 198  Q
    ||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  2294378 caccctagattctctgcttgagaatgtcataacacagcaggggagtattatatgtggatttgtcatatggtgggattttgtttcata 2294464  T

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Target: chr2; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 357 - 449
Target Start/End: Original strand, 2322015 - 2322107
Alignment:
Q  357 agaaatgtatgtcctagctaaaacagggaaattatgtttaggatcatagtgtctcatacaatatagattatgtttcctccctaaacatctgtg 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2322015 agaaatgtatgtcctagctaaaacagggaaattatgtttaggatcatagtgtctcatacaatatagattatgtttcctccctaaacatctgtg 2322107  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 2303890 - 2304046
Alignment:
Q  20 tatggtgatgaaaaatccattgcaagttcatatttctcctagggtataggttatgtgtaacgatttggagt-----atgtaatgttgttgtgtgaaccac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |    || || | |     ||   |||||  ||||||||||||    
T  2303890 tatggtgatgaaaaatccattgcaagttcatatttctcctaggatatagattatgtttttt-atgtgtaatgataaatcgtatgttcctgtgtgaaccac 2303988  T
Q  115 tctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtggattt 172  Q
    ||||||||||||||||||||||||||||||||| ||  | ||||||||||||||||||    
T  2303989 tctagattctctgcttgagaatgtcataacacagcaaagaaatattatatgtggattt 2304046  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 218 - 338
Target Start/End: Original strand, 2294512 - 2294633
Alignment:
Q  218 ttcttatatatcttgtttcttgtataaaataaaacat-gtctgtcattcttgtaagtcaagatactttcaatgtataaaaaatatgatc-ttgtttttgt 315  Q
    ||||||||||||||||||| ||||||||  ||||| | | |||||||||||||||||||||||||||||| |||| |||| |||||||| ||||| | ||    
T  2294512 ttcttatatatcttgtttcctgtataaataaaaactttgcctgtcattcttgtaagtcaagatactttcattgta-aaaatatatgatctttgttgtagt 2294610  T
Q  316 aatatcaaagttgttttattttg 338  Q
    |||||  |||||| |||||||||    
T  2294611 aatattgaagttggtttattttg 2294633  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 2310606 - 2310665
Alignment:
Q  18 actatggtgatgaaaaatccattgcaagttcatatttctcctagggtataggttatgtgt 77  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  2310606 actatggtgatgaaaaatccagtgcaagttcatatttctcctaggatatagattatgtgt 2310665  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 2339306 - 2339375
Alignment:
Q  218 ttcttatatatcttgtttcttgtataaaataaaacatgtctgtcattcttgtaagtcaagatactttcaat 288  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||||| ||||| |||||||||||||||    
T  2339306 ttcttatatatctcgtttcttgtataaaataaaacatgtttggcattctggtaag-caagatactttcaat 2339375  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 2351468 - 2351522
Alignment:
Q  22 tggtgatgaaaaatccattgcaagttcatatttctcctagggtataggttatgtg 76  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||    
T  2351468 tggtgatgaaaaatccattgcaagttcgtatttctcctaggatatagtttatgtg 2351522  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 2327447 - 2327502
Alignment:
Q  22 tggtgatgaaaaatccattgcaagttcatatttctcctagggtataggttatgtgt 77  Q
    |||||||||||||||||||||||||||||||||||| |||  ||||| ||||||||    
T  2327447 tggtgatgaaaaatccattgcaagttcatatttctcatagaatatagattatgtgt 2327502  T

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Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 360 - 449
Target Start/End: Original strand, 2331566 - 2331653
Alignment:
Q  360 aatgtatgtcctagctaaaacagggaaattatgtttaggatcatagtgtctcatacaatatagattatgtttcctccctaaacatctgtg 449  Q
    |||||||||||||||| | ||  |||||||||||||||| | ||| | |||||||||||||||||| ||  |||||||||||||| ||||    
T  2331566 aatgtatgtcctagctgagac--ggaaattatgtttaggtttataatatctcatacaatatagattgtgcatcctccctaaacatttgtg 2331653  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 2304241 - 2304278
Alignment:
Q  218 ttcttatatatcttgtttcttgtataaaataaaacatg 255  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2304241 ttcttatatatcttgtttcttgtataaaataaaacatg 2304278  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 290
Target Start/End: Original strand, 2331412 - 2331484
Alignment:
Q  218 ttcttatatatcttgtttcttgtataaaataaaacatgtctgtcattcttgtaagtcaagatactttcaatgt 290  Q
    |||||| |||||||||||||| ||||||||||||||||  || | |||||| ||| |||||||| ||||||||    
T  2331412 ttcttacatatcttgtttcttatataaaataaaacatgcatgaccttcttgcaagccaagatacattcaatgt 2331484  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 2327562 - 2327664
Alignment:
Q  96 atgttgttgtgtgaaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtggatttctcata-tggtgggattttgttt 194  Q
    ||||||||||||||||||  ||||||||||| ||||  |||||||||||   |||| |||||||||||||| ||||| ||| | ||||  ||||||| ||    
T  2327562 atgttgttgtgtgaaccatcctagattctct-cttggcaatgtcataac---acagcggaatattatatgtagatttgtcacattggtaagattttgctt 2327657  T
Q  195 catacaa 201  Q
    |||||||    
T  2327658 catacaa 2327664  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 449
Target Start/End: Original strand, 2294657 - 2294688
Alignment:
Q  418 tatagattatgtttcctccctaaacatctgtg 449  Q
    ||||||||||||||||||||||||||||||||    
T  2294657 tatagattatgtttcctccctaaacatctgtg 2294688  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 2331158 - 2331198
Alignment:
Q  18 actatggtgatgaaaaatccattgcaagttcatatttctcc 58  Q
    |||||||| ||||||||||||||||| | ||||||||||||    
T  2331158 actatggtcatgaaaaatccattgcaggctcatatttctcc 2331198  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 41127477 - 41127517
Alignment:
Q  22 tggtgatgaaaaatccattgcaagttcatatttctcctagg 62  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  41127477 tggttatgaaaaatccactgcaagttcatatttctcctagg 41127517  T

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