View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11532_low_3 (Length: 451)
Name: NF11532_low_3
Description: NF11532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11532_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 36 - 435
Target Start/End: Original strand, 32016911 - 32017310
Alignment:
| Q |
36 |
ttgaatgttggagtggggaagcgagaggtaagtagatgctgaaagggttttggttagtttggcacgcaattatttgggtgatatggaaagctagaaatgc |
135 |
Q |
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| T |
32016911 |
ttgaatgttggagtggggaagcgagaggtaagtagatgcggaaagggttttggttagtttggcacgcaattatttgggtgatatggaaagctagaaatgc |
32017010 |
T |
|
| Q |
136 |
aaagatatttgagaatcattcaaaagatgtggaggagatggtggaagagatcaaggtgttgtcttggagatggatgttgatgagattgaaggttttgcct |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32017011 |
aaagatatttgagaatcattcaaaagatgtggaggagatggtggaagagatcaaggtgttgtcttggagatggatgttgatgagattgaaggttttgcct |
32017110 |
T |
|
| Q |
236 |
tgcctattttactagtggaattgggatcctgaagattgcttaagaaggtagtatttaaggggggagggtctgtgtttttcgagctgtgctctctgggttg |
335 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32017111 |
tgcctattttacgagtggaattgggatcctgaagattgcttaagaaggtagtatttaaggggggagggtctgtgtttttcgagctgtgctctctgggttg |
32017210 |
T |
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| Q |
336 |
gttcacagcaggttttgttggtgttttcccctatgcggctgttctgctatctgtagtagtgctgctgtcttnnnnnnntgcggggagtgttgttttctgc |
435 |
Q |
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| T |
32017211 |
gttcacagcaggttttgttggttttttcccctatgcggctgttctgctatctgtagtagtgctgctgtcttgggggggtgcggggagtgttgtttactgc |
32017310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 919392 - 919435
Alignment:
| Q |
161 |
gatgtggaggagatggtggaagagatcaaggtgttgtcttggag |
204 |
Q |
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| T |
919392 |
gatgtggaagagatagtggaggagatcaaggtgttgtcttggag |
919435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 26397728 - 26397778
Alignment:
| Q |
164 |
gtggaggagatggtggaagagatcaaggtgttgtcttggagatggatgttg |
214 |
Q |
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| T |
26397728 |
gtggatgagatagtggaagagatcaaggtaatgtcttggcgatggatgttg |
26397778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 27185643 - 27185603
Alignment:
| Q |
164 |
gtggaggagatggtggaagagatcaaggtgttgtcttggag |
204 |
Q |
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| T |
27185643 |
gtggatgagatagtggaagagatcaaggggttgtcttggag |
27185603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 8453176 - 8453220
Alignment:
| Q |
171 |
agatggtggaagagatcaaggtgttgtcttggagatggatgttga |
215 |
Q |
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| T |
8453176 |
agattgtggaggaggtgaaggtgttgtcttggagatggatgttga |
8453220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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