View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11532_low_6 (Length: 384)
Name: NF11532_low_6
Description: NF11532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11532_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 29285090 - 29285436
Alignment:
| Q |
18 |
aggtaaataaactacagaaagaaaagaaaatgtaattagtaagagctacaaactttatagtaagcacttatgcagaaataaacagtaatagaatctcaca |
117 |
Q |
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| T |
29285090 |
aggtaaataaactacagaaagaaaagaaaatgtaattagtaagagctacaaactttatagtaagcacttatgcagaaataaacagtaataggatctcaca |
29285189 |
T |
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| Q |
118 |
gaaaatggcgatggagtttttagtttttacaagggggtaatttgaaaatattcctgtcattggagatgttgaacttacataatgcagcactattcataag |
217 |
Q |
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| T |
29285190 |
gaaaatggcgatggagtttttagtttttacaagggggtaatttgaaaatattcctgtcattggagatgttgaacttatataatgcagcactattcataag |
29285289 |
T |
|
| Q |
218 |
ttttttggtgtttccgttttccctcacaacatttcaatatacagacacttattttatggttggtcgttagctattctgtccaagtttgttggatgagtac |
317 |
Q |
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| T |
29285290 |
ttttttggtgtttccgttttccctcacaacatttcaatatacagacacttattttatggttggtcgttagctattctgtccaagtttgttggatgagtac |
29285389 |
T |
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| Q |
318 |
ttgtaactaaatgcttttcaaaattaaattgaaaattggaacagaattg |
366 |
Q |
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| T |
29285390 |
ttgtaac--aatgcttttcaaaattaaattgaaaattggaacagaattg |
29285436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 35 - 366
Target Start/End: Original strand, 35233011 - 35233343
Alignment:
| Q |
35 |
aaagaaaagaaaatgtaattagtaagagctacaaactttatagtaagcacttatgcagaaataaacagtaatagaatctcacagaaaa-tggcgatggag |
133 |
Q |
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| T |
35233011 |
aaagaaaagaaaatgtaattagtaagagctacaaactttagagtaagaacttatgcagaaataaacagtaatagaatctcgcagaaaaatggcgatgaaa |
35233110 |
T |
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| Q |
134 |
tttttagtttttacaagggggtaatttgaaaatattcctgtcattggagatgttgaacttacataatgcagcactattcataagttttttggtgtttccg |
233 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| |||||| ||||| |
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| T |
35233111 |
ttttttgtttttacaagggggtaatttgaaaatattcctgtcattggagatgttgaacttacataatgcagcgcgtttcataaatttgttggtgcttccg |
35233210 |
T |
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| Q |
234 |
ttttccctcacaacatttcaatatacagacacttattttatggttggtcgttagctattctgtccaagtttgttggatgagtacttgtaactaaatgctt |
333 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
35233211 |
ttttccttcacaacatttcaatataaagacacttattttatggttggtcattagctattctgtccaagtttgttggatgagtaattgtaactgaatgctt |
35233310 |
T |
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| Q |
334 |
ttcaaaattaaattgaaaattggaacagaattg |
366 |
Q |
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| T |
35233311 |
tccaaaattaaattgaaaaatggaacagaattg |
35233343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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