View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11532_low_7 (Length: 328)
Name: NF11532_low_7
Description: NF11532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11532_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 4 - 326
Target Start/End: Complemental strand, 39280602 - 39280280
Alignment:
| Q |
4 |
catcttgaatcttcccatttgtacaaagagcaccaatcaagcaattgtatcccacagtattcagactgagacccttggctgacatgctattcacaacttc |
103 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39280602 |
catcttgaatcttcccatctttacaaagagcaccaatcaagcaattgtatcccacagtattcagactgagacccttggctgacatgctattcacaacttt |
39280503 |
T |
|
| Q |
104 |
agaagcttcctcgaagtgactctgcttacagaaaccatctatcaatatagtgtatgtgatcacattggcctcaaaacctttcttgaccatctcatctaag |
203 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39280502 |
agaagcttcctcgaagtgaccctgcttacagaaaccatctatcaatatagtgtatgtgatcacattgggctcaaaacctttcttgaccatctcatctaag |
39280403 |
T |
|
| Q |
204 |
aattcaagagaagagaccagatgcccctttttgcaaagcccgtcgatcattatgttaaacgtgaaggcatcaggctcaaaaccggcaattaccatgtttt |
303 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39280402 |
aattcaagagcagagaccagatacccctttttgcaaagcccatcgatcattatgttaaacgtgaaggcatcaggctcaaaaccggcaattaccatgtttt |
39280303 |
T |
|
| Q |
304 |
tgtacaaaagatcctttgcttct |
326 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
39280302 |
tgtacaaaagatccttggcttct |
39280280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 129 - 326
Target Start/End: Original strand, 17349847 - 17350044
Alignment:
| Q |
129 |
ttacagaaaccatctatcaatatagtgtatgtgatcacattggcctcaaaacctttcttgaccatctcatctaagaattcaagagaagagaccagatgcc |
228 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||||||||| |||||||||||||| |||||||| || || |
|
|
| T |
17349847 |
ttacagaaaccatttatcaatatagtgtatgtgatcacatttggctcaaaacctttctctaccatctcatttaagaattcaagagcagagaccaaatacc |
17349946 |
T |
|
| Q |
229 |
cctttttgcaaagcccgtcgatcattatgttaaacgtgaaggcatcaggctcaaaaccggcaattaccatgtttttgtacaaaagatcctttgcttct |
326 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||| |||||| |
|
|
| T |
17349947 |
ccttcttgcaaagtccatcgatcattatgttaaacatgaaggcatcaggctcaaagccggcaattaccatgttttggtacagaagatccttggcttct |
17350044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University