View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11532_low_8 (Length: 320)
Name: NF11532_low_8
Description: NF11532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11532_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 4749434 - 4749736
Alignment:
| Q |
1 |
ggtgagaagttggaagatgaagacattatagacttgcttcttttgttcttgttagctggtcatgaaagctctgcttatggtgttttgtggaccgttatca |
100 |
Q |
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| T |
4749434 |
ggtgagaagttggaagatgaagacattatagacttgcttcttttgttcttgttagctggtcatgaaagctctgcttatggtgttttgtggaccgttatca |
4749533 |
T |
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| Q |
101 |
acctcactaatcatccacatgtcttcgaaagagccaaggttttaatactattaattaatgtggcattttcaaaatttgttactg-nnnnnnnnnnaacaa |
199 |
Q |
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| T |
4749534 |
acctcactaatcatccacatgtcttcgaaagagccaaggttttaatactattaattaatgtggcattttcaaaatttgttactgtttttttttttaacaa |
4749633 |
T |
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| Q |
200 |
acaaaactatgaaccctttcagaaagaacaagaagagattatggcaagaaggccttccgatcaaaaaggaattacacatacggaaattaggcaaatgaaa |
299 |
Q |
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| T |
4749634 |
acaaaactatgaaccctttcagaaagaacaagaagagattatggcaagaaggccttccgatcaaaaaggacttacacatacggaaattaggcaaatgaaa |
4749733 |
T |
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| Q |
300 |
tat |
302 |
Q |
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| T |
4749734 |
tat |
4749736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 4757923 - 4758054
Alignment:
| Q |
9 |
gttggaagatgaagacattatagacttgcttcttttgttcttgttagctggtcatgaaagctctgcttatggtgttttgtggaccgttatcaacctcact |
108 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||| |||| |||||| | |
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| T |
4757923 |
gttggaggatgaagacattatagacttgcttcttgtgttcttgttagctggtcatgaaagctctgctcatggaattttgtggactattatttacctcatt |
4758022 |
T |
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| Q |
109 |
aatcatccacatgtcttcgaaagagccaaggt |
140 |
Q |
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| T |
4758023 |
gatcatccacatgtcttccaaagggccaaggt |
4758054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 302
Target Start/End: Original strand, 4758195 - 4758282
Alignment:
| Q |
215 |
ctttcagaaagaacaagaagagattatggcaagaaggccttccgatcaaaaaggaattacacatacggaaattaggcaaatgaaatat |
302 |
Q |
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|||||||||||||||||||||||| |||| || |||||||||| |||||||||| | | | || |||||||| ||||||| ||||| |
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| T |
4758195 |
ctttcagaaagaacaagaagagatcatggaaacaaggccttccactcaaaaaggactgaaccttaaggaaattaagcaaatgcaatat |
4758282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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