View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11533_high_12 (Length: 243)
Name: NF11533_high_12
Description: NF11533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11533_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 94 - 235
Target Start/End: Complemental strand, 8546748 - 8546595
Alignment:
| Q |
94 |
ttagacccaaatttaatctataaagaaaatttaaaccaat------------taatatgttaatgagtttcatcaaattgttaaggataatttgattttg |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8546748 |
ttagacccaaatttaatctataaagaaaatttaaaccaatcaaattgtaggttaatatgttaatgagtttcatcaaattgttaaggatagtttgattttg |
8546649 |
T |
|
| Q |
182 |
attttattggtcagattttacttagttctggaccgaactccggattatcggccc |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8546648 |
attttattggtcagattttacttagttctggaccgaactccgaattatcggccc |
8546595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 8546563 - 8546464
Alignment:
| Q |
23 |
ggccaaacaaaagagagaggggtattttagatatcaaattaaaagtttattattgatttttcaattgttaattagacccaaatttaatctataaagaaaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8546563 |
ggccaaacaaaagagagaggggtattttagatatcaaattaaaagtttattattgatttttcaattgttaattagacccaaatttaatctataaagaaaa |
8546464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 1581917 - 1581985
Alignment:
| Q |
28 |
aacaaaagagagaggggtattttagatatcaaattaaaagtttattattgatttttcaattgttaatta |
96 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1581917 |
aacaaaagagagagggatgttttagatatcaaattaaaattttattattgatttttcaattgttaatta |
1581985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 1602898 - 1602830
Alignment:
| Q |
28 |
aacaaaagagagaggggtattttagatatcaaattaaaagtttattattgatttttcaattgttaatta |
96 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1602898 |
aacaaaagagagagggatgttttagatatcaaattaaaattttattattgatttttcaattgttaatta |
1602830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University