View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11533_high_8 (Length: 301)
Name: NF11533_high_8
Description: NF11533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11533_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 280
Target Start/End: Original strand, 7104303 - 7104572
Alignment:
| Q |
11 |
cacagaccgattttgtggggacgtgttaggcccaactgcaatgtttatgaagctgttctcacttctcaaaaatgtgagattcaaaacaatactcgagtat |
110 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7104303 |
cacaaaccggttttgtggggacgtgttaggcccaactgcaatgtgtatgaagctgttctctcttctcaaaaatgtgagattcaaaacaatactcgagtat |
7104402 |
T |
|
| Q |
111 |
gttctgctgtggttgtagttttttagttgtcatgacaaatcatggaccagctattcaactgaaatgacatcacgtggccttcatggagaggatatagttg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7104403 |
gttctgctgtggttgtagttttttagttgtcatgacaaatcatggaccagctattcaactgaaatgacatcacgtggccttcatggagaggatatagttg |
7104502 |
T |
|
| Q |
211 |
ggttttatttctttcatttcaataactggtctggtactgtggtacaaatcattgatcaactattcacagt |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7104503 |
ggttttatttctttcatttcaataactggtctggtactgtggtacaaatcattgatcaactattcacagt |
7104572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 200 - 280
Target Start/End: Original strand, 7092256 - 7092336
Alignment:
| Q |
200 |
ggatatagttgggttttatttctttcatttcaataactggtctggtactgtggtacaaatcattgatcaactattcacagt |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| ||||||| ||||||||| |
|
|
| T |
7092256 |
ggatatagttgggttttatttctttcatttcaataactggtctgatactgtggaacaaaccatggatcaaccattcacagt |
7092336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University