View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11533_low_11 (Length: 252)
Name: NF11533_low_11
Description: NF11533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11533_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 41510872 - 41511098
Alignment:
| Q |
11 |
cagagacagagtttttctctattcctggcatacctgacaaaattcaagtcacaaaagaacagataccaggaacagtgaaagaggaaaagatgaaggggtt |
110 |
Q |
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| T |
41510872 |
cagagacagagtttttctctattcctggcatacctgacaaaattcaagtcacaaaagaacagataccaggaacagtgaaagaggaaaagatgaaggggtt |
41510971 |
T |
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| Q |
111 |
tcctgagaaaatgcaagaagctgaaatgaaatcatatggtgtaatcataaacagttttgaggagttagagaaagaatatgttaatgattacaaaaaggta |
210 |
Q |
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| T |
41510972 |
tgctgagaaaatgcaagaagctgaaatgaaatcatatggtgtaatcataaacagttttgaggagttagagaaagaatatgttaatgattacaaaaaggta |
41511071 |
T |
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| Q |
211 |
agaaatgataaggtttggtgtgttggt |
237 |
Q |
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| T |
41511072 |
agaaatgataaggtttggtgtgttggt |
41511098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 41520544 - 41520683
Alignment:
| Q |
11 |
cagagacagagtttttctctattcctggcatacctgacaaaattcaagtcacaaaagaacagataccaggaacagtgaaagaggaaaagatgaaggggtt |
110 |
Q |
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| T |
41520544 |
cagagacagagtttttctctattcctggcatacctgacaaaattcaagtcacaaaagaacagataacaggaacagtgaaagaggaaaagatgaaggggtt |
41520643 |
T |
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| Q |
111 |
tcctgagaaaatgcaagaagctgaaatgaaatcatatggt |
150 |
Q |
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| T |
41520644 |
ttctgagaaaacgcaagaagctgaaatgaaatcatatggt |
41520683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 37 - 236
Target Start/End: Original strand, 48532255 - 48532451
Alignment:
| Q |
37 |
ggcatacctgacaaaattcaagtcacaaaagaacagataccaggaacagtgaaagaggaaaagatgaaggggtttcctgagaaaatgcaagaagctgaaa |
136 |
Q |
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| T |
48532255 |
ggcatacctgaccaaattcaagtcaccaaagagcagataccaggaatattgaaaggtgaac---tgaaggagtttggggagaagatgcatgatgctgaaa |
48532351 |
T |
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| Q |
137 |
tgaaatcatatggtgtaatcataaacagttttgaggagttagagaaagaatatgttaatgattacaaaaaggtaagaaatgataaggtttggtgtgttgg |
236 |
Q |
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| T |
48532352 |
tgaagtcatatggtgaaatcataaacacttttgaggagttggagaaagcatatgttaaggattacaagaaggaaaaaaatggcaaggtatggtttgttgg |
48532451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 41536721 - 41536762
Alignment:
| Q |
196 |
gattacaaaaaggtaagaaatgataaggtttggtgtgttggt |
237 |
Q |
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| T |
41536721 |
gattataaaaaggtaagaaatgataaagtttggtgtattggt |
41536762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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